KEGG   Phaeobacter gallaeciensis DSM 26640: Gal_01910
Entry
Gal_01910         CDS       T02968                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pgd  Phaeobacter gallaeciensis DSM 26640
Pathway
pgd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pgd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Gal_01910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pgd03400]
    Gal_01910
Enzymes [BR:pgd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Gal_01910
DNA repair and recombination proteins [BR:pgd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Gal_01910
SSDB
Motif
Pfam: TRCF DEAD CarD_TRCF_RID UvrB_inter Helicase_C ResIII SecA_DEAD AAA_30 RecG_dom3_C AAA_16 UB2H
Other DBs
NCBI-ProteinID: AHD09662
UniProt: V9WKM4
Position
complement(1933281..1936748)
AA seq 1155 aa
MAQRAITAGGAPEGFDARLILKEAASSNAPVVHVARDDKRMEATRAALAFFAPDMPVISF
PGWDCLPYDRVSPNADIAAARMATLAALVHQMPGQFVLLTTLNAATQRVPARQVLKDAAF
VAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIFPPGQSGPVRLDLFGDV
LDGARRFDPATQRTTEKLSIVELAPVSEVILDEAAVTRFRQNYRIEFGAAGTDDPLYEAV
SAGRKYQGIEHWLPFFHDRLETLFDYLPSATVTLDDQVTPARLARWDSIVDQYETRKIAM
AQKGRMDTVYKPVPPGLLYLDDASWEAAIEDHRVIQFHPLPQASGPGVIDAGGRIGRNFS
PERQLESVSLFKTLADHIKARMQVGPVVVASYSEGARERLTGLIEDEGLSEVIAINDGTR
IGKSGLHLAVWALEHGFETDDLTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGDL
VVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEQSKLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQETDDQ
LRAIGEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLARQH
AAAFAQRFRGFPLEVRQLSRFVTAKDAAKTREGMAKGTVDIVVGTHALLAKSVRFQNLGL
LIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDAVTIREALLREHYRGGQSFYVVPRITDLPDVEAFLKEQLPELSYVVAHGQL
AAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGELEGLTGGDDQWAPQINLGVPVLIPENYVPDLDVRL
GLYRRLSDLSTKVELEGFAAELIDRFGPLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFIQAQDGLAKVKDNKIVVRRDWKKDSDKIKGAFAIARDLAEK
VVAEKKKAKAKAKSG
NT seq 3468 nt   +upstreamnt  +downstreamnt
atggcgcaacgggcaatcaccgcaggcggcgcaccagaaggctttgatgcgcggctgatc
ctgaaggaagccgccagcagcaatgcgccggtggtgcatgttgcgcgcgatgacaagcgg
atggaggcaacgcgggcggcgctggctttcttcgcgccagatatgcccgtcatcagtttt
ccgggctgggattgcctgccctatgaccgggtgtcgcccaatgcggacattgctgcggcg
cggatggccacgctggcggcgctggtgcatcagatgccggggcagtttgtgctgctgacc
acgctgaatgctgcgacccagcgggttcctgccagacaggttctgaaggatgccgccttt
gttgccgaggtggatcggcgcatcgatgaggaggccctgcggggctacctgacgcgcatg
ggcttcaccaagagcccgacggtgatggagccgggggattttgcggtgcggggcgggatc
attgatatctttcctcccgggcagagcggcccggtgcggctggatctctttggcgatgtg
ctggatggggcgcgccgttttgatccagcgacccagcggactacggagaagctgtcgatt
gtcgagctggcgccagtttccgaggtgatccttgatgaggccgctgtaaccaggtttcgg
cagaattaccggatcgagtttggtgcggcgggcacggatgatccgctctatgaggcggtg
tctgcagggcggaaataccaagggatcgaacattggttgccgtttttccatgatcggctg
gagaccctgtttgattacctgccgagtgcaacggtaacgttggacgatcaggtgacaccc
gcccgattggcccgctgggacagcatcgtggaccaatatgagacccgcaagattgcgatg
gcacaaaaggggcggatggacacggtctacaaacctgtgccgccgggtctgctttatctt
gatgatgcgtcttgggaggcggcaattgaggatcatcgggtgatccagttccatccgctg
ccgcaggccagcggacctggggtgattgatgctggtggccggattggtcgcaacttctcc
cctgagcgacagttggagagtgtcagccttttcaaaacattggcggatcatattaaagcg
cggatgcaggtgggaccggttgtggtcgcctcctattccgagggtgcgcgggagcgtttg
accgggttgatcgaggacgaaggtctgtcggaggttatcgcgatcaacgacggcacccga
attggcaaatccggtctgcatttggcggtctgggcgctggaacatgggtttgagaccgat
gatctgacggtgatttccgaacaggatgtgctgggggaccggctgatccgcgcgccaaag
aaacgccgcaaggcagagaatttcctgaccgagacacaatccctcagccctggcgatctg
gtggtgcatgtggaccatgggataggtcgctataaggggcttgaagttgtcaccgccgca
ggcgctgcgcatgagtgcattctgctggaatatgcagagcagtcgaagctgtacctgccg
gttgagaatatcgagctcctgtcgaaatacggtcatgacgaggggctgctggatcggcta
ggaggcggggcgtggcaagcgaagaaggccaagctgaaggaacggatccgcgagatggcg
gatcgtctgatccgggtcgcagcggagcgcgcgttgcgcaaggcgccgatgatggatccg
ccgccgcatgcctgggaagagttctccgcccgcttcccctatcaggaaaccgatgatcag
ctgcgcgcgattggcgaagtgatggaagatcttcaatccggctctcccatggaccggttg
atctgcggcgatgtcggcttcggcaagaccgaggttgcgatgcgcgcggccttcattgcg
gcgatgtccggtgtgcaggtggcgattgttgcgcccaccacgttgctggcgcgccagcat
gcggcggccttcgcgcagcggtttcgcgggtttcctttggaagtcaggcagttgtcgcgg
tttgttactgcaaaggacgccgccaaaacccgcgagggtatggccaaaggcaccgttgat
attgtcgtcggcacccatgctttgctggcaaaatccgtgcggttccagaacctcggcctg
ctgatcatcgacgaggaacagcatttcggtgtcgcccataaagagcggctaaagcagatg
cgcagtgacatccacgtgctgacgctgaccgcaacgccgatcccgcgaacgctgcaattg
agcctgactggcgtgcgcgatctctccatcatcggcaccccgccggtggaccgtctggcc
atccgcacatatgtgagcgagttcgatgccgtcaccatccgcgaagcgctgctgcgagag
cactatcgcggtgggcagagtttctatgtggtgccgcgcatcaccgatctgccggacgtt
gaagcttttttgaaggagcagttgccggagctgtcttatgtcgtggcgcatggtcaattg
gcggcgggtgatctggatgaccggatgaatgccttttacgatggtaaattcgacgtgctg
ctggcgacaacaattgtcgaatccggtttggatattccaactgccaacacgatggtggtg
catcgggccgatatgtttggtctggcgcagctttatcagatccgcggccgcgtggggcgg
tcaaagacgcgcgcttatgcctatctcaccaccaagccccgtgtgcgcctgacgcccggc
gcggaaaaacgcctgcgggttctgggatcgctggatacgctgggggcggggttctcgctg
gcttcgcaggacctggatattcgcggcgcgggcaatctccttggtgaagagcaatccggc
cagatgcgtgatgtgggctatgagctttatcaatccatgctggaagaggcgattgctaag
atcaaatccggtgaacttgaaggcctgaccggtggcgatgaccaatgggcgccgcagatc
aaccttggcgtaccagtgttgatcccggagaattacgtgccggatctggatgtgcgtctg
ggtctttatcgtcggctctcggatctgagcaccaaggtggagctggaaggttttgccgca
gaactgatcgaccgttttgggccgctgcccaaagaggtcaacactttgatgctggtggtg
cggatcaaggcgatgtgcaaacgggccgggattgccaagttggacggtggaccaaaaggc
gcaaccattcagttccacaatgataaattcgcctcgcctcaggggcttgtggagttcatt
caggcgcaggatggtctggccaaggtgaaggacaacaagattgtcgtgcgccgggattgg
aagaaagacagcgacaagatcaaaggtgccttcgccatcgcgcgggatctggctgagaag
gttgttgccgaaaagaagaaagccaaggcaaaggcgaaatctggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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