KEGG   Pluralibacter gergoviae: LG71_03620
Entry
LG71_03620        CDS       T03300                                 
Symbol
ligB
Name
(GenBank) DNA ligase B
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pge  Pluralibacter gergoviae
Pathway
pge03030  DNA replication
pge03410  Base excision repair
pge03420  Nucleotide excision repair
pge03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pge00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LG71_03620 (ligB)
   03410 Base excision repair
    LG71_03620 (ligB)
   03420 Nucleotide excision repair
    LG71_03620 (ligB)
   03430 Mismatch repair
    LG71_03620 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pge03032]
    LG71_03620 (ligB)
   03400 DNA repair and recombination proteins [BR:pge03400]
    LG71_03620 (ligB)
Enzymes [BR:pge01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LG71_03620 (ligB)
DNA replication proteins [BR:pge03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LG71_03620 (ligB)
DNA repair and recombination proteins [BR:pge03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LG71_03620 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LG71_03620 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     LG71_03620 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LG71_03620 (ligB)
SSDB
Motif
Pfam: DNA_ligase_OB DNA_ligase_aden HHH_5 RNA_ligase
Other DBs
NCBI-ProteinID: AIQ99051
Position
complement(748693..750372)
AA seq 559 aa
MIWRSVGLLILILIGTPGQATCPAWSAGQAASEIARLEAQIARWNDRYWQAGISEVSDET
FDQLSEHLGQLQGCFGRSKPLPPIAARRGGARHPVAHVGLRKMADGDALARWMAAKQDLW
AQPKIDGVAVTLEYRNGALYRAISRGDGFAGEDWTDAVRRLPAVPAQISGPPGDSVLQGE
LFLLRDGHVQQAMGGINARAKVAGAMKRRAAASSPETIGIFIWGWPDGPAAMAARLTQLK
AAGFGYVSDYTLPVAHLGDVERLRQRWLTAPLPFVTDGVVVRAAREPAGRFWKPGDGEWA
VAWKYPPVTRVAEVRAIAFSVGRTGKVAAVAQLAPVTLDDKQVTRVSLGTVDRWRRLDIA
PGDRLVIGLAGQGIPRLERVAWRAAERTKPAPPAGDFHALSCYRDLPGCRAQFLSRLQWA
GKMLQIEGAGEAMWRQLLRTHRFDTLFGWLALDAGALEKTPGLSAKRVPTLLHQFNLARR
KPFRLWLQAAGIPLSADALRLLGDERWGQLLARSEAEWQRLPQVGSVKAGQLMRWLRAPE
VAALARWLAEQGVSGFGSQ
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgatatggcgcagcgttgggcttttgatactcatactgatcggcacgccgggacaggcg
acatgcccggcgtggtcggccgggcaggccgccagcgagatcgcccggcttgaggcgcag
atagcgcgctggaacgatcgctactggcaggcgggtatttccgaggtcagcgatgagacc
ttcgatcagctcagcgaacacctcggtcagctacagggctgcttcggccggtcgaaaccg
ctgccgccaattgccgcccggcgcggcggcgcgcgtcatccggttgcccacgtcgggctg
cgtaaaatggccgacggcgacgcgctcgcgcgctggatggctgcaaagcaggatctgtgg
gcgcagcccaaaattgacggcgtggcggtgacgctggagtaccgcaatggtgcgctgtac
cgggccatcagccgcggcgacggcttcgccggcgaggactggacggatgccgtcaggcgg
ctcccggcggtgccggcgcagatatccgggccgccgggcgacagcgtgctgcagggcgag
ctgttcctgctgcgcgacggacacgtgcagcaggcgatgggcggcatcaacgcccgggcg
aaggttgcgggcgccatgaagcgcagggccgctgcttcctctccggaaacgatcggcatc
tttatttggggctggcccgacggcccggccgcgatggcggcgagactcacgcagctgaag
gcggccggttttggttacgtcagcgactacacgctgccggtggcgcacctgggcgacgtc
gagcggctgcgccagcgctggctgaccgcgccgctgccgttcgtgaccgacggcgtggtg
gtgcgtgcggcccgagagcctgcgggcaggttctggaagcccggcgacggcgagtgggcg
gtggcgtggaaatatccgccggtgacaagggtggcggaagtcagggcgattgccttcagc
gtcgggcgcaccggcaaggtcgcggcggtggcgcagctggcgccggtgacccttgatgat
aagcaggtaacgcgcgttagcctcggcacggtcgaccgctggcggcggctggatatcgcg
ccgggcgatcggctggtgatcggccttgccgggcagggcattccgcgccttgagcgcgta
gcgtggcgggccgcagagcgaacgaaaccagcgccgcccgccggcgatttccacgcgctc
agctgctatcgcgacctgcccggctgtcgggcgcagttcctgtcgcgcctgcagtgggcc
ggaaaaatgctgcagattgagggcgcgggcgaggcgatgtggcggcagctgctgcggacg
caccgcttcgacacgctgttcggctggctggcgctggatgccggggcccttgaaaagacg
ccgggcctgtcggccaaacgcgtaccgacgctgctgcaccagtttaatctcgcccggcgc
aaaccttttcgcctgtggttacaggcggcaggcatcccgctgagcgccgatgcgctgcgt
ctgcttggcgatgaacgctggggtcagctgctggcccgcagcgaggcggagtggcagcgg
ctgccgcaggtagggagcgtaaaggccggccaactaatgaggtggctgcgcgcgccggag
gtggccgcccttgcccgctggctggcggagcagggcgtgagcggctttggcagtcagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (31)   

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