KEGG   Paenibacillus graminis: PGRAT_11570
Entry
PGRAT_11570       CDS       T03325                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pgm  Paenibacillus graminis
Pathway
pgm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PGRAT_11570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgm03019]
    PGRAT_11570
   03009 Ribosome biogenesis [BR:pgm03009]
    PGRAT_11570
Enzymes [BR:pgm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PGRAT_11570
Messenger RNA biogenesis [BR:pgm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PGRAT_11570
Ribosome biogenesis [BR:pgm03009]
 Prokaryotic type
  rRNA helicases
   PGRAT_11570
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 AAA_22 Flavi_DEAD
Other DBs
NCBI-ProteinID: AIQ68178
UniProt: A0A089M9I0
Position
2726508..2727947
AA seq 479 aa
MSVFRDYSLNVEIIRALDVLNYLEPTEVQSKVIPAALKGQDLIVKSQTGSGKTASFGIPL
CELVDWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKQELTQK
THVVVGTPGRVFDHIERGTLTLNRIKYLVIDEADEMLSMGFIEQIEQIIQKLPRERVTML
FSATLPDAVKNLCLKYMNGPADIEIEASGITTAAIEHALIEVRQAAKFGVLLDLLTVENP
DSCIIFCRTQEQVNELFRGMADLEYPVDKIHGGMMQDERFEVMNAFKRGQFRYLIATDVA
ARGIDIENITHVINYDTPMEKESYVHRTGRTARAGKSGKAITLATPNEHKWVQEIESYIG
FSLPVMKAPSEAAVAYAKPAFEAKLGKQQVRKKGKTEVMNEDIMKLYFNGGKKKKLRAVD
FVGTIAKLEGITADDIGIITIQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgagtgtatttagagattacagcttaaatgtagagattatccgcgcgctggatgtgctg
aattatcttgagcctacagaggtgcagagcaaggtcattccagcggccctgaagggccag
gatctgatcgtcaagtcacagaccggcagcggcaaaaccgcatcgttcggcatccccctc
tgtgaactggtagactgggcggagaacaagccgcaggctttggtactgacaccgacccgg
gagctggctgcacaggttaaggaggacatcacgaacatcgggcgcttcaagcggattaag
gcggtcgctttgttcggcaagcagccgtttgccccgcaaaaacaagagcttacacaaaaa
acgcatgtcgtcgtaggtacaccgggacgtgtgttcgaccatatcgagcgcggcacgctg
acgctgaaccggatcaaatatctggtgatcgatgaagcggatgagatgctgagcatggga
tttatcgagcagattgaacagattatccagaagcttccccgggagcgcgtgacgatgctg
ttctccgcgacgctgccggatgccgtgaagaatctgtgcctgaagtatatgaacgggccg
gcggatattgagatcgaagccagcggcattacgacagcggcgattgagcatgccctgatt
gaagtcagacaagctgcgaagtttggggtgctgcttgacctgctgacggtggagaatccg
gacagctgcattattttttgccggacgcaggagcaggtgaacgagctgttccgtggtatg
gcggatctggagtatccggtggacaagattcatggcgggatgatgcaggacgagcgcttt
gaggtcatgaacgcattcaagagaggccagttccgctatctaatcgccaccgacgttgct
gcgcgcgggattgacattgagaacatcacccatgtgatcaactacgatactccgatggaa
aaagagagctacgtgcaccgtaccggacgcaccgcacgcgccggcaaaagcggtaaagcg
atcaccctcgccacgccgaatgaacacaagtgggtacaggagattgagagctatatcgga
ttcagcctcccggtgatgaaagctccttcggaggctgccgtggcctacgccaagcctgct
tttgaagcgaagctgggcaagcagcaggtccgcaagaagggcaagactgaggtcatgaac
gaggacatcatgaagctctatttcaacgggggcaagaaaaagaagctgagagccgtcgat
ttcgtcggcaccattgcgaagctggaaggaatcaccgctgacgacatcgggatcatcacg
atccaggacaatgttacttatgtagatatcctgaacggcaaaggggcgcaggtgctgcag
gcgatgaaggacaccaccgtgaagggcaagctgcttaaggtgcatgtcgcgaagaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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