KEGG   Puccinia graminis: PGTG_10106
Entry
PGTG_10106        CDS       T02226                                 
Name
(RefSeq) small nuclear ribonucleoprotein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
pgr  Puccinia graminis
Pathway
pgr03018  RNA degradation
pgr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pgr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PGTG_10106
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PGTG_10106
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgr03019]
    PGTG_10106
   03041 Spliceosome [BR:pgr03041]
    PGTG_10106
Messenger RNA biogenesis [BR:pgr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PGTG_10106
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PGTG_10106
Spliceosome [BR:pgr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PGTG_10106
SSDB
Motif
Pfam: LSM DUF150_C FoP_duplication
Other DBs
NCBI-GeneID: 10545813
NCBI-ProteinID: XP_003328805
UniProt: E3KJB1
AA seq 125 aa
MADRGRGGRGGSGGNSRGRGGGRAGGDDKPKREAILDLAKFADKRVRVKFMGGREITGIL
KGYDQLLNLVMDEVEEILREPEGATVTSPPKTRSLGLAVIRGTSLVVINPVDGYEEIANP
FINQQ
NT seq 378 nt   +upstreamnt  +downstreamnt
atggcagatcgtggtcgaggcggacgtggagggtcaggagggaacagtcgaggaagaggt
ggcggacgagctgggggagatgacaagccgaaacgcgaagctatcctggatttggccaag
tttgccgacaaacgggttcgcgtcaagttcatgggaggtcgagagattaccggtattctc
aagggctatgatcagcttctaaatctggtgatggatgaggtcgaggagatccttcgcgaa
ccagagggtgctaccgtcacttcaccgccaaagacaagatcactaggactggcggttatc
agaggaactagtttggtggtcataaaccccgttgatggttacgaagaaattgcaaatccg
tttatcaatcaacagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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