KEGG   Pangasianodon hypophthalmus (striped catfish): 113524516
Entry
113524516         CDS       T05759                                 
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
  KO
K06823  collagen type XVIII alpha
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:phyp04147]
    113524516 (col18a1)
   00535 Proteoglycans [BR:phyp00535]
    113524516 (col18a1)
   00536 Glycosaminoglycan binding proteins [BR:phyp00536]
    113524516 (col18a1)
Exosome [BR:phyp04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   113524516 (col18a1)
Proteoglycans [BR:phyp00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   113524516 (col18a1)
Glycosaminoglycan binding proteins [BR:phyp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   113524516 (col18a1)
SSDB
Motif
Pfam: Endostatin Collagen Collagen_trimer DUF1554
Other DBs
NCBI-GeneID: 113524516
NCBI-ProteinID: XP_026766606
Position
Unknown
AA seq 1513 aa
MLNKMSSLGLWLGVLVGLCIGHSHGWFWFDDSKDDSPGTQTPNYLTTLGTSVPTTVPTRE
HLRTKGTDASDVDVLAKGEEMGSGGGSRVGSARNEQSKAEVEHGSGLESGSGSGSLSLSG
SGVEPASGPTLKPATLSPLSEDQEINNVQTNLSIGGDNIHLLAEDTKLEKNLTKADLSQM
DEHIGNVAGSPGDPITTERGVSLSQLIGYPLPEGVTKSYEPDPGFVLDQSSKTGQLARVH
LPTSFYRDFSLLFNLKPTSTKAGVIFSITDTNQKIMYVGVKLTAVKDRKQNIVLFYTEPD
SQASYEAASFTVPSLVNYWTRFSISVLDDQVTLYPSCDSEPQVLRFERSPDEMELEPGAG
IFVGQAGGADDDKFVGIIGDLKVVGDPRAAERYCEEEEDDSDGASGDYGSGDYENKYTVS
TTSQPSSPLQQPPVNPTVVTVSKDVPKVLTGIGEARGEKGEKGERGPKGDRGPEGPKGDA
GSMTGSGGGAKGEKGSLGEKGMKGAAGFGYPGPKGDQGPPGPQGPPGPPGPSADVVERGD
GSVVQRIAGPRGPPGPAGPPGPAGPEGEPGDPGEDGIAGPPGQPGFPGTPGDTGAKGEKG
DKGEGHPGPRGPPGPPGPPGPPSRSDRPTFVDMEGSGFGDLEGVRGLPGLPGPPGPPGQP
GLPGPVGPASATHATVSGVSGPPGPPGKDGTPGQPGLPGLSGADGKPGLPGPKGEKGDTG
ELGLPGAVGEKGAQGPPGLPGTPGEPGLAGLPGPMGPVGPPGPPGPGYRAGFDDMEGSGV
NFFSGVPGVRGPEGIRGPPGLPGQPGIPGQKGEKGSEGLPGTGGHPGLDGFPGPQGPQGE
RGFKGERGDPGRDGIGHPGPPGPPGPPGQIIYRSTDEHDTVVEGRLSGIPGKAGFPGPMG
PKGERGDPGAPGHGIKGEKGEPGVVIGPDGSPLFLGSTVGQKGERGPAGPVGPPGAYGPP
GMKGEIGMPGRPGRPGITGSKGEKGESGSGSGYGYPGPPGPPGPPGPPGPPAYPTAVERF
NRYEDSGRVYPGMKGEKGDRGTPGIPGAPGNFDIYTLKNELKGERGDTGLKGEKGEPGGH
YGSPYGGVQGPPGPPGPKGDSIIGPPGPQGPPGPPGVGYEGRPGTPGPPGPPGPPGSPSL
PGAHRPTVSIPGPPGPPGPPGLPGQNAGVTVVRTFDLMLATAQRQPEGALIYIVDKSDLY
VRVRDGVKQVMLGTYSPFYRDSNNEVAAVQPPPVVHYSQSHSANNGAGHYSHVVETPVRQ
PESHGSEHFQPGSDPQYNIHYSSHPDTRYPPQPDHRYPSHTHQEYIPVQPERYPIAPIQR
PSTPVHQPEGHVHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAAGLKGTFRAFLS
SKLQDLYSIVRKSDRNTLPIVNLKDQVLFSSWESLFGDSEGRINTNVPIYSFDGRDILRD
SAWPEKMIWHGSNGKGHRQMDNYCETWRTSDHAVMGLASSLQAGQLLQQKPSSCSNNFIV
LCIENSYIIQSKK
NT seq 4542 nt   +upstreamnt  +downstreamnt
atgttgaacaagatgtcttcgcttggactgtggcttggtgtgctggtgggtctgtgcatt
gggcactcacatggatggttttggtttgatgactcaaaggacgacagcccgggcactcag
acaccaaactatttgactactttgggcacaagcgttccaacaacagtacctacaagagaa
cacctgaggacaaaaggcacagatgcttccgatgtggatgtccttgctaagggtgaggag
atggggagtggagggggctctagagttggttcagccaggaatgagcagtcaaaggcagag
gtagaacatggttctgggttagagtctggctctggatctggatcattgtctctttctggg
tctggggttgaacctgcatctgggcctacacttaaacctgccactttgtcccctctgtcg
gaagaccaggaaatcaacaatgttcaaaccaatttgtccattggtggggataatatccat
cttcttgcagaggatactaagctggagaagaatctgaccaaagcggatctctctcaaatg
gatgaacacattggcaatgttgctggttcacctggtgaccccattacaacagagagaggt
gtttcgctctcacagctgattggttaccctcttcctgaaggcgtcaccaagagttatgaa
ccagaccctggctttgtgctcgatcagagctccaagactggtcagctggcccgggtgcac
ctgcccacatctttttaccgtgacttctccctcctgttcaacctgaagcccacttctacc
aaagctggagtcatcttctcaatcaccgacaccaaccagaaaatcatgtacgtcggagtg
aagcttacagccgtgaaggacagaaagcagaatattgtcctgttctacactgagccagac
tcccaggcatcctatgaggctgcaagcttcactgttccctcccttgtcaactactggact
cgtttctccatcagcgtgttggacgatcaagtcaccctgtaccccagttgtgactcggag
ccccaggtgctccgctttgagcgttctccagatgaaatggagttggaaccaggagccggg
atctttgtgggtcaagctggaggagctgatgacgataagtttgtgggtattattggagat
ctgaaggtggttggagaccctcgtgcagctgaacggtattgtgaggaagaagaggatgat
tccgacggagcctcgggtgattatggaagcggtgattacgaaaacaagtacacagtctcg
accacaagtcaaccttccagccccttacagcaaccgccagtgaaccctactgtggtaaca
gtgagcaaggatgtgcccaaagtgctaacaggcataggtgaagctcggggagaaaaaggt
gagaaaggagagagaggacccaaaggagaccgtggtcctgaggggcccaagggagatgca
gggtccatgaccggatctggaggcggtgctaaaggagagaaaggtagcctaggagaaaaa
ggaatgaagggtgctgcaggatttggctatcctggaccaaaaggtgaccaaggacctcct
ggtcctcaaggtccccctggtcctcccgggcccagtgctgacgtagtggagaggggagac
ggctcagtagtgcaacgtatagcaggaccgaggggacctccaggacctgcaggacctcca
gggccagcagggcctgaaggagaacctggtgaccctggtgaagatggaattgctggacca
cccggacaacctggattcccaggaactcctggagatactggagctaaaggagaaaaaggt
gacaagggtgaaggtcatcccggacccaggggaccaccaggacctccgggacctccagga
cccccgtctcgctcagacaggcctacatttgtggacatggagggctctggctttggtgat
ctagagggtgtgcggggattgcctggtttgcctggtcctcctggcccacctggccaacct
gggcttccaggacctgtaggtcctgctagtgctacacatgctactgtttctggtgtgtct
ggacctcctggtccacctggaaaggacggtactccaggacaaccgggacttccaggtctc
tcgggtgctgatggaaaacccggcctgcctggccctaaaggagagaagggtgataccggc
gagctcggcttacctggagctgtgggagaaaagggtgcacaggggcctcctggtcttcca
ggaacacccggagagcctggcctcgctggccttcccggaccaatgggacccgtgggacca
cctgggcctccagggccgggctaccgtgctggatttgacgacatggagggttcaggtgta
aactttttcagtggcgtgcctggagtcagaggaccagaaggcatacggggtccacctggt
ctgcctggtcagcctggtatacctgggcagaaaggagagaaaggcagcgagggacttccg
ggaacaggtggccatcctggacttgatggcttccctggaccacagggaccccagggagag
cgtggatttaaaggagagaggggtgatccaggtcgcgatggtattggccatccaggccct
ccaggaccacctggacctccaggacaaatcatctatcggtctacggatgaacatgatact
gtggttgaaggacgtctgtctggcatccctggtaaagcaggattcccaggcccgatggga
ccaaagggtgagagaggagacccaggtgctccaggacatggcattaagggtgagaaagga
gaacctggagtggttattggacctgatggaagccctctgtttcttggttcaacagttggt
caaaagggggagaggggacctgctggaccagttggaccccctggagcatatggtcctcct
ggcatgaagggtgagatcgggatgccaggcaggcctggtcgaccaggtatcactggaagt
aaaggagaaaaaggagagtcaggctctggctcaggatatggttatcctggtccacctggg
cctccaggccctccaggtcccccaggacccccagcataccctacagctgtggagagattt
aatagatatgaagactctggaagagtgtatcctggtatgaaaggagagaagggagaccgt
gggactcctggtattcctggggcgccaggtaactttgacatttacactctgaagaacgaa
ctgaagggtgagcgtggagacaccggactgaaaggagagaagggcgagccgggcggacac
tacggttctccctacggaggtgttcagggaccaccaggacctcccggtccaaaaggagat
tctatcatagggcctccaggtccacagggtccaccaggacctcctggtgttggttatgaa
ggccgtccaggaaccccaggcccaccaggacctcccggcccacctggttcaccctcatta
cctggcgctcacaggccaacagtcagcattcctggccctcctggtcctcctggtccacct
ggtttgcctggccagaacgctggagtgacagtagtgagaacatttgacttaatgctcgca
acagcacagagacaaccagagggtgctctcatctacatagtggacaaaagtgatctctat
gtcagagtgcgtgatggcgtcaaacaagtcatgcttgggacttatagccccttctacaga
gattcaaacaacgaggtggcagcagtacagcctcccccggtagtgcactactctcagagc
cactcagcaaataacggagcagggcattactcccatgttgttgaaactccagtccggcag
ccggagagccacgggagcgagcattttcaaccaggcagtgatccacagtacaacatacac
tactcctctcacccagacaccaggtacccacctcagccggaccacagatatccgtcccac
actcatcaggagtacatccctgtacagccagagaggtaccccatcgccccgatccaaaga
cccagcacacccgtccatcagcctgagggtcatgtacacacatcaggaccggggctgcat
ctgatagccctgaacagccctcaggtggggaacatgaggggcatccgtggcgcagacttc
ctgtgcttccagcaggcacgtgctgcaggcctgaagggaacgttcagggctttcctgtcc
tccaaactgcaggatctctacagcatcgttcgcaaatctgacagaaacacattgcccatt
gtcaacctcaaggaccaagtgctgttcagcagctgggaatcactgttcggggattcagag
ggcaggattaacaccaacgtacccatatattcgtttgatggcagagatatcctcagggac
agtgcttggccagagaagatgatctggcatggctccaatggtaagggtcaccgtcaaatg
gataactactgtgagacgtggaggacgtcagatcacgccgtgatgggtctggcctcatct
ctgcaggctggccagctcctacagcagaaacccagcagctgctccaacaacttcatagtg
ctgtgtatcgagaacagctacatcatacagtctaagaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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