KEGG   Scheffersomyces stipitis: PICST_30460
Entry
PICST_30460       CDS       T01023                                 
Symbol
SMC5
Name
(RefSeq) structural maintenance of chromosomes protein
  KO
K22803  structural maintenance of chromosomes protein 5
Organism
pic  Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:pic00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_30460 (SMC5)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     PICST_30460 (SMC5)
SSDB
Motif
Pfam: SMC_N AAA_23 AAA_29 ABC_tran AAA_21 AAA_27 AAA_33 GSKIP_dom HSBP1 RNA_helicase AAA
Other DBs
NCBI-GeneID: 4837901
NCBI-ProteinID: XP_001383656
JGI: 30460
UniProt: A3LQV2
Position
3:complement(118225..121506)
AA seq 1093 aa
MTDIYQAIGDLRQYVGPNDSESVAKRRKVQSSRDFRPGSLMKLKLTNFNNYGSGEFNLSP
SLNMVIGPNGSGKSTVVSAICLGLGGKIDLIKRQTLSSMIKKGKSTASTEVTIKNFDGQP
PILVKREFTAKENRWYINHRPATEAKVKELRARFNIQLDNLCHFLPQERVAEFAGMSQEK
LLMETERTLGDGQLYRLHEDLIKNDTSRQDVTTRIEELEEKLSKFNEERSRLEADIKKLE
EYEGKTLEIEQHTKIIPYAQLSDLKKQRADLKRERDKAKSKLSKFLSSMDPLKDQHKEIE
TKVEMEKGLYSDIDDKQKEIRSRFINRKADLSKIKEEIGGLKSTVESLKSKSIKLQNQLK
KLEEKRHELISQRDLIVLPDKDEVEGYRKLRREVSEKKDEIGSKIEDLEDKIQEKQSSRK
EIMNNKKRVEQSLNSKDRLMVLSPRGGPPNSLRDGAYNAHKFLRDEAQLKDHYFESPVVC
CTVTNKTMAPHLEKVIDNNTLFSITTTNKQDFSMISSFQRKMKINFPIRLTTNSGTRNPR
IPKERLKQWGFECYLSDFLSGPGPVVDMIYDISKIQDIPVSRSGLSEEQIERLTMLDGNG
RYPFKKFISHDTLFVLTKSNYGSNQVSYTTEKVTGSRWFDSSGLTQEAKDFMNGQLQEFK
DRYNVLKGEEDGYLVEKQSLDSESRKLSAELEKYKNKIQHFTNETKNRAKIEGKLTALDA
QIKKTTKESTEDTSEQVDETEEKIKSKYLDYSNKLSELSIIGKESSDVAIELSLQSFRVL
QIRNREIAARNLIAKVEEQQVSLRKEYERLKAEYDQIKKGDAVKKIEEQSASYTPEERVL
LSRLAKAYMDAGNFSEQVIRDKISLLEDERSVMATADVSSIERLRRTLTEIDSLEKTLPR
LKDDKSKLDKRISDIQEAWEPELTKAIRNISLAFNKRFSRVASDGQVELAKAERFKDWKL
QILVKFRQESELKVLDHQSQSGGERAVTTIFFMMSLSGLTNSPFRVVDEINQGMDRKNEK
MAHRYLVDTACHSLSSQYFLVTPKLLTGLYYHPEMAVHCIYSGPLVDGTDRGNKEPDFMD
FKANSLAQKSIYT
NT seq 3282 nt   +upstreamnt  +downstreamnt
atgacggacatataccaagccataggcgatttgagacaatatgttggtcccaatgattct
gaatctgtggctaagcgtaggaaagtacagagttctcgtgatttccgtcctggaagtctt
atgaagttgaagttgaccaatttcaacaactacggtagtggagagttcaatttgtctcct
tcactcaacatggttattggtcctaatggatctggtaaaagtactgtagtttctgcgatc
tgtttggggttgggtggaaagattgatcttattaaaagacagactctttcttccatgatt
aagaaaggaaagtccacagcttcaactgaagttacaatcaagaattttgatggtcaacct
cctattttagttaaaagagagttcacggcaaaagaaaaccgttggtatataaaccacagg
ccggccacagaagccaaagttaaagagttaagagctaggtttaacatccagttggacaat
ttatgtcactttttgccgcaagagagggtagctgaatttgctgggatgtcacaagagaag
ctacttatggaaacagaaagaactttaggtgatggccagttgtaccgtcttcatgaggat
ttgatcaagaacgatactctgagacaagatgtgactacaagaatagaagaacttgaagaa
aagttactgaaattcaacgaagaaagaagtagactagaagcagatataaagaagcttgaa
gagtatgaaggaaagactctagagatagagcaacacacaaagataattccgtacgcccaa
ctatctgatctcaaaaaacagagagcagatttaaaacgagagagagacaaagcaaaatct
aaattgtcgaagtttttatcttccatggaccctttgaaagaccagcataaagaaatagaa
accaaagttgaaatggaaaaaggactatattccgatatagatgacaagcaaaaggaaata
cggtctaggtttatcaatagaaaggcagatttatcgaaaattaaggaggaaatcggaggc
ttgaagtcaacggttgagtctttgaagagtaaatcgatcaaattgcagaatcaattaaag
aaacttgaagaaaaaaggcacgaattgatttcacaacgtgacttgatagtattacctgac
aaagatgaggttgaaggttacagaaaattgcgaagggaagtgtctgaaaagaaggatgaa
ataggaagcaagattgaagacttggaggacaaaattcaagaaaagcaatcgtcacgaaaa
gaaatcatgaacaataagaagcgagtagagcagagtttaaacagtaaagatagactaatg
gtcctttctccaagaggggggccgccaaactctttgagggatggggcatataatgcacac
aagtttctcagagatgaagctcagttaaaggaccattattttgagtcgcctgtggtttgt
tgtactgtaacaaacaaaacaatggccccacacttggaaaaggtgattgacaacaatacg
ctcttttcaattaccaccactaacaaacaagatttcagcatgatctcttcttttcaaagg
aagatgaagataaatttcccaattagattaacaaccaacctgggtacacgaaatccacgt
attcccaaagaaagattaaagcaatgggggttcgaatgctacttgtcagattttctttcg
ggtccagggccagtggtagatatgatatatgatatatcaaagattcaggatattcccgtg
agtagaagtggattatcagaagagcagatcgaacgattgacaatgctagatggaaacggg
agataccctttcaagaagtttatttctcatgatactctatttgtgttgactaaatcgaac
tatggtctgaatcaagtttcttatactacggaaaaggttactggatctagatggttcgat
tcatcaggattgactcaagaagctaaagatttcatgaatggtcagttacaggaatttaag
gacaggtacaacgttttaaaaggcgaagaagatggatatcttgttgagaagcaaagtctc
gattcagaaagtcgtaaactttcggctgagcttgagaaatataaaaataaaattcagcat
ttcaccaatgaaacgaaaaacagggcaaaaatagaaggaaagttaacggctcttgacgcg
caaatcaaaaagacaacaaaggaatctacagaagacacaagtgaacaagttgacgaaacc
gaagagaagatcaaatcaaagtatttggattattcaaacaagttatcggagcttagtatc
attggtaaggaatctagcgatgttgctattgagctaagtttgcaatcatttagagtgctt
caaatcagaaacagagagatcgcggcccggaatctaattgctaaagtagaagaacaacaa
gtttcattaagaaaggagtatgaaagattgaaagcagaatatgaccaaattaagaagggg
gatgctgttaaaaagatcgaagaacagagtgcttcgtacactccggaagaaagagtacta
ttgtctaggcttgccaaggcatatatggatgctggtaacttctcagaacaggtgataaga
gacaaaatactgcttttagaagacgagcggtctgtgatggctactgctgatgtgagttcc
atcgaaagattacggaggaccttgactgaaattgattcactcgagaagactcttccaagg
ttgaaggacgacaagtctaaattggacaaaagaattagtgatattcaagaagcatgggaa
ccagagctaactaaggcaattcggaatatttcattagcatttaacaagcgattctccaga
gtcgcaagcgatggacaagtagaattagccaaagcagaaagattcaaagattggaaattg
caaattctagttaaatttagacaagagtcagagctaaaggttttggaccaccaatcacaa
tctggaggggaaagagcagtaacaactatctttttcatgatgtctttgctgggattaaca
aattctccatttagagttgtggatgaaatcaatcaagggatggatcgaaagaatgaaaag
atggctcacaggtacttggtggacacggcctgccatagtttgagttcacagtatttcttg
gtcactcccaagcttttgacaggtctctattatcatcctgaaatggcagttcattgcatt
tattctggtcctttggtcgacggaacagatagaggaaataaggaacctgatttcatggac
ttcaaagcaaattcattagcgcagaaatctatatatacatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (60)   

Download RDF
DBGET integrated database retrieval system