KEGG   Scheffersomyces stipitis: PICST_37319
Entry
PICST_37319       CDS       T01023                                 
Symbol
RPC10
Name
(RefSeq) DNA-directed RNA polymerases small subunit
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
pic  Scheffersomyces stipitis
Pathway
pic03020  RNA polymerase
pic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PICST_37319 (RPC10)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PICST_37319 (RPC10)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pic03021]
    PICST_37319 (RPC10)
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_37319 (RPC10)
Transcription machinery [BR:pic03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     PICST_37319 (RPC10)
  RNA polymerase III system
   RNA polymerase III
     PICST_37319 (RPC10)
  RNA polymerase I system
   RNA polymerase I
     PICST_37319 (RPC10)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PICST_37319 (RPC10)
SSDB
Motif
Pfam: DNA_RNApol_7kD YjdM_Zn_Ribbon HypA zinc-ribbon_6 FYVE_2 FYVE NCD3G DZR DUF1451 C1_1 zf-C3HC Sp38_C FYDLN_acid Zn-ribbon_8 RNA_POL_M_15KD
Other DBs
NCBI-GeneID: 4851504
NCBI-ProteinID: XP_001387619
JGI: 37319
UniProt: A3GGV5
Position
1:2002122..2002340
AA seq 72 aa
MSAPKEGFIIPASISHAALGQVTNKSLGVRYNCAQCAASFSLSKNDAIRCKECGHRVIYK
ARTRRMVQFEAR
NT seq 219 nt   +upstreamnt  +downstreamnt
atgtctgctccaaaagaaggattcatcatcccagcttctatctcccacgctgcactcggt
caggtgacgaacaagtccttaggtgtaagatacaactgtgctcagtgtgctgcttctttt
tcattgtcgaagaacgatgccatcagatgcaaggaatgtggtcacagagtcatctacaag
gccagaaccagaagaatggtgcagttcgaagctcgttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system