KEGG   Scheffersomyces stipitis: PICST_90501
Entry
PICST_90501       CDS       T01023                                 
Symbol
PAB1
Name
(RefSeq) Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein)
  KO
K13126  polyadenylate-binding protein
Organism
pic  Scheffersomyces stipitis
Pathway
pic03015  mRNA surveillance pathway
pic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PICST_90501 (PAB1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_90501 (PAB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_90501 (PAB1)
   03041 Spliceosome [BR:pic03041]
    PICST_90501 (PAB1)
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PICST_90501 (PAB1)
   mRNA cycle factors
    Stress granule specific factors
     PICST_90501 (PAB1)
Spliceosome [BR:pic03041]
 Complex C
  Other components
   Complex C specific factors
    PICST_90501 (PAB1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded YflT SET_assoc
Other DBs
NCBI-GeneID: 4840386
NCBI-ProteinID: XP_001385508
JGI: 90501
UniProt: A3LXL0
Position
6:777504..779759
AA seq 632 aa
MSAADANQLQESLEKLNLDSAPAAAEEEAVAAESAPAGEEGADSANVAESTASLYVGELN
TSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEG
RPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSK
CFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNI
DLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEING
QKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFG
TITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQ
LEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRG
QPFGGPEQWPRPGPNGQPVPVYGIPPQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDLAA
IIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFT
NHFEDALTAFEEYKNSEAAAPVAPAAPAEPQA
NT seq 1899 nt   +upstreamnt  +downstreamnt
atgtctgccgctgacgccaaccaactccaagaatcgttggaaaagttgaacctcgattct
gctccagccgccgctgaagaagaagctgttgctgctgaatctgctccagccggtgaagaa
ggcgctgactctgccaacgttgctgagagcactgcctctttgtatgttggagaattgaac
acctctgtcaacgaagctacgttattcgagatcttctctcctattggccaggtttcgtct
atcagagtctgtagagatgctgtttcgaagaagtctttgggttacgcctacgtcaactac
cacaagatggaagacggagaaaaggctatcgaagaattgaactacagcccaattgaaggc
cgtccttgtcgtatcatgtggtctcagagagacccttctgccagaagatcaggtgacggc
aacattttcatcaagaacttgcaccctgccatcgacaacaaggctttacacgacaccttt
tccactttcggtaagatcttgtcgtgtaaggtcgccactgacgacatgggtcagtccaag
tgcttcggttttgttcactacgagactgccgaagccgcagaagccgccatcgaaaacgtt
aacggcatgttgttgaacgaccgtgaagtctttgttggtaagcacatctccaagaaggac
cgtgaatccaagtttgaggaaatcaaggccaacttcaccaacatctatgtcaagaacatt
gacttggaatactctgaagaggatttgaagaagttgttcactccatacggtgctatcact
tccatctacttggaaaaggacgccgaaggtaagtctaagggtttcggtttcgtcaactac
gagggtcacgaagccgctgtcaaggctgtcgaagagttgaacgacaaggaaatcaatggt
caaaagatctacgttggtagagctcaaaagaagagagaaagaatggaagagttgaagaag
cagtacgaaaacaccagattggaaaagttgtccaagtaccaaggtgtcaacttgttcatc
aagaacttggacgatactatcgactccgaaaagttggaagaagaattcaagcctttcgga
accatcacctctgctagagttatggtcgatgaaactggtaagtccaagggtttcggtttc
gtttgtttctcgtccccagaagaagccaccaaggctatcaccgaaatgaaccaaagaatg
ttctttggcaagccattgtacgtcgccttggctcaacgtaaggatgtcagacgttctcaa
ttagaacaacagatccaagcccgtaaccagatgagaatgcaaaatgctgctgctaccggt
ggaatcccaggtcaattcattcctccaatgttctatggccaacaaggtttcttcccacct
aacggtagaggtaacgctcctttcccaggtccaaacccacagatgatcatgagaagaggt
caaccattcggtggtccagaacaatggccaagaccaggtcctaacggccaaccagtccca
gtttacggtatcccaccacaagcttactctgacttcaacggtcaaaacatccgtcaacaa
agaggctactaccctaaccgtaaccagaacaagggccgtcaacaaagagacttggctgct
atcattgcctctgctcctcctgaccaacaaaagagaatcttaggtgaagaattgtaccct
aagattgttgctaccggcaaggctcaagaaccagaagccgctggtaagattaccggtatg
atgttggacttggacaaccaagagatcttagctttgttggaagacgacgagttgttcacc
aaccactttgaagatgctttgactgctttcgaggaatacaagaactcggaagctgctgct
cctgttgctccagctgctccagctgagccacaagcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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