KEGG   Psychromonas ingrahamii: Ping_0053
Entry
Ping_0053         CDS       T00450                                 
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pin  Psychromonas ingrahamii
Pathway
pin03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Ping_0053
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pin03400]
    Ping_0053
Enzymes [BR:pin01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Ping_0053
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Ping_0053
DNA repair and recombination proteins [BR:pin03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Ping_0053
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zf-TFIIB zinc-ribbons_6 Auto_anti-p27 DZR NFACT_N OrfB_Zn_ribbon zf-ACC
Other DBs
NCBI-ProteinID: ABM01927
UniProt: A1SR12
Position
complement(76031..76843)
AA seq 270 aa
MPELPEVETSRKGISPHLINKSVQNVVLRHTQLRWKIPQDLLSDIKDKILLSIDRRAKYL
LFNFTSGTLLIHLGMSGSLRICPLNSPPKKHDHADLIFADCLLRYTDPRRFGAILWLGLT
PEDSPLLNKLGPEPLNDDFNAKYLYQQATKRKLPVKQFIMDQKVVTGVGNIYATEALFNS
GISPIRAAGNISEKRYQILVTEIKEILQQAIKQGGTTLKDFVGSDGKPGYFQQTLQVYGK
TGQQCPSCETPLKAVKLAARASVYCPECQS
NT seq 813 nt   +upstreamnt  +downstreamnt
atgccagaattaccggaagtagaaaccagcagaaaagggatcagcccgcatcttattaat
aaatcggtccagaatgttgtgctgcggcatactcaattacgctggaaaataccgcaggat
ttattatcggacattaaagataaaatattactttcaatcgatcgccgtgctaaatacctg
ctgttcaacttcaccagtggcaccttgttaattcacctgggcatgtcgggcagtttacga
atttgcccattgaatagcccgccaaaaaaacatgaccatgccgatcttattttcgcagat
tgtttattacgctataccgatccacgccgtttcggggccattttatggttgggtttaacg
ccggaagactcgcctctattaaataaactcggtcctgagccgctcaatgatgattttaat
gcgaagtatttataccagcaggcgactaaacgaaaactgccggtaaaacaatttattatg
gatcaaaaagtcgtaacgggtgtgggtaatatctatgcgacggaagccttatttaatagt
ggcatctcgccaataagggcggccggcaatatctctgaaaaacgctatcaaatattagtt
actgagattaaagaaattttacagcaagcgataaaacaaggcggcaccaccctgaaagat
tttgtcggtagtgatggtaaacctggctattttcaacagacgctacaggtttatggtaaa
acaggtcagcaatgccctagctgcgaaacccctttaaaagctgttaaattagccgcaaga
gccagtgtgtattgtccggaatgccagagctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (42)   

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