KEGG   Pirellula sp. SH-Sr6A: VN12_00960
Entry
VN12_00960        CDS       T04360                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VN12_00960 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pir03400]
    VN12_00960 (mfd)
Enzymes [BR:pir01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VN12_00960 (mfd)
DNA repair and recombination proteins [BR:pir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      VN12_00960 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII UB2H RecG_dom3_C AAA_22 Ribosomal_L32p
Other DBs
NCBI-ProteinID: AMV30653
UniProt: A0A142XUE0
Position
complement(292598..296266)
AA seq 1222 aa
MKAKRPKSRTLADFLKRGTDPSAPDDFHDDPNAIESIELTLEKHASSEASSNKPSNSGDG
KGVRKKAPSRSSASSRPSAGSVDSFDAERKRAERAAQIKQSEKLDHDAKAIQLRAKATEL
LDGILDLKGFENSIRRWSRNDPICWEGAWLGAVAPITAATWRKFQRPILVVLSQHQDVEI
VARDLDFFLEHNCEVFPPASDEIAEDALQQAEVIQRLHVLSHLQSYTKNSKQLDAPVIVT
TIQAMMHDVPSPSQLENDRRRLRVGQRVDLAKLKDWLADNGYRTTTSVQMAGEFTARGGI
LDVFPPDCSEPRRIEWFDDEIESIRSFDPMTQRSSTRLDQVDLIAADEAIKDEASFLEFL
PKETMVLVHEPIAALHHSEAYLARIPFPERFRKPTEILKTLQQHAVAQITQLAIEGYTGE
LLQIPIGDVQRIGGEMEGLAKQVDQALGKNRTALVVCINEGELSRMHDLMQECRAYQEGR
VLLELGLLSAGFELPPQGAFVLTLNQMLRRSTLRRSSKRHASRAIDSFLDLKPGDLVVHL
SHGIGIYLGMEMIEKHGQKFEHLTIEFDGGTKLYVPTTKIDLIQRYVGGTKTRPKLAKIG
GQAWVRQKKAAEESVVDMAAELLELQAQRRSISGIAFKPDSVWQTQFDTSFPYEETADQL
TAIAATKADMMSTRPMERLLCGDVGFGKTEVAMRAAFKAVESGYQVAVLVPTTVLAEQHY
KTFKARMAEFPFEIAKLNRFISASQQRETLKRLARGQVDIVVGTHRVASMDVQFYNLGLL
IIDEEQKFGVELKERLKRSNQNVDVLSMSATPIPRTLHMSLVGVRDISNLETAPEERMAV
ETRVARFDEHLIRNAILRELNRDGQVYFVHNRIEDMPVLLSRLQRIVPEARILVGHGQME
EGALEQVMVDFIEHRADILLATTIIESGLDIPNANTMFIDEADRYGLSELHQLRGRVGRY
KHQAYCYLLVDKRKHLSPDSARRLHAIEEFSQLGAGFGIAMRDLEIRGAGNLLGTQQSGH
IAAVGYELYCQLLENAVRELTKQPQKLEITVELNIPIEAYLPSEYVPEMRHKIDIYRRLS
RIQSIQSIEEIKQELEDRFGKLPPPVERLLAVSQLRMDATIWSIQYVGIEDEFLVFHYTD
RNRAEQLAKKHNGRLRIVDQTSCYWPLRPDKPQPQRGTAAEPIWRRTPVEPTQPAKIEPP
EPIEKLIQRTDLLALLQSILQL
NT seq 3669 nt   +upstreamnt  +downstreamnt
atgaaggcgaagcgacccaagtcgcgcaccctagcggactttctcaaacgagggaccgat
ccatcggcccccgatgactttcacgacgatccgaatgcgatcgaaagcatcgaactaacg
ctcgagaaacacgcatcgtccgaggcatcgtccaacaagccatcgaattctggtgatggt
aaaggtgtcaggaagaaagctcccagcaggtcgtctgcgagttcacgcccttctgccggt
tcggtagactccttcgatgccgaaaggaagcgagcggaacgggccgctcaaatcaaacag
tccgaaaaattggaccacgatgccaaagccattcagctccgcgccaaagcgacggaattg
ctcgatggcattctcgacctcaagggattcgagaacagcatacgtcggtggagtcgaaac
gatcccatttgctgggaaggggcatggctcggggcggtcgcaccgatcaccgcggcgacg
tggcgaaagttccagcgtcccatcttggtcgtcctatcccaacatcaagacgtcgagatc
gtcgctcgcgatctcgatttctttctcgagcacaactgcgaagtctttcctcccgcctcg
gatgagatcgccgaagacgcgctgcaacaagcagaagtcatccagcgactccatgtcctg
tcgcatctccagtcgtatacgaagaattcgaagcaactcgatgcacccgtgatcgtcacg
acgatccaagcgatgatgcacgatgttcccagcccatcgcaattggagaatgaccgacga
aggcttcgcgtcggccaacgggtcgacttggccaaactgaaggactggctcgccgacaac
ggttatcgaacgaccaccagcgtgcaaatggcgggcgagttcacggcccgagggggaatt
ctcgacgtctttccgcccgattgcagcgaacctcggcgcatcgagtggttcgatgatgag
atcgagtcgatccgctccttcgatccgatgacccaacgatcgtcgactcggctcgatcaa
gtcgatttgattgcggcggacgaggcgatcaaggatgaggcctcgtttctggagttcctt
cccaaggaaacgatggtcctcgtgcacgagccgatcgccgccctgcaccattccgaagcg
tacttggctcgcatcccgttcccagagcggtttcgaaagccgaccgagatcctgaaaacg
ctgcagcagcatgccgtcgcgcaaatcacccagttggccatcgaggggtatacgggagaa
ctgctgcagatacccattggtgacgtgcaacgcatcggcggcgagatggaaggcctcgcc
aagcaagtcgatcaggccttgggtaagaatcgcaccgcattggtggtctgcatcaatgaa
ggggagctctcgcgcatgcatgatctcatgcaggaatgtcgagcttatcaggagggacgt
gtacttctcgagttgggactcttgagcgcagggtttgaacttccaccgcaaggggcgttc
gtactgaccctcaatcagatgctgcgtcgttccaccttgcgacggtcctcgaaacgccat
gcttcgcgcgcgatcgatagcttcctcgatctgaagccgggtgacttggtagttcatttg
tcccacggcatcggtatctatctcggcatggagatgattgaaaagcacggacagaagttc
gagcacttgaccatcgagttcgacggcgggacgaaactctatgttccaaccacgaaaatc
gatctgatccaacgctacgttgggggaacgaaaacgcgtcccaagctagcgaagatcggc
ggtcaagcctgggtgcgccaaaagaaagcggccgaagagtccgtggtcgacatggccgca
gaattgctggagttgcaagcccagcggcgcagcatcagcggaatcgccttcaagcctgat
tcagtttggcaaacgcaattcgatacgtcgtttccctacgaagagaccgcagatcagctc
accgccatcgcagcgacaaaggccgatatgatgtcgacccgtcccatggagcgcttgctg
tgcggcgatgttggctttggaaaaacagaagtggcgatgcgagccgccttcaaggctgtg
gagagcggctaccaagtcgccgttttggttcccaccacggtcttggcagaacagcattac
aagacgttcaaggctaggatggcagagtttcccttcgaaattgccaagctcaatcgattt
atttcggcgagccagcaacgggaaacgttgaaacgtctcgcgcgtggacaagtcgatatc
gtcgtgggaacccatcgcgtcgcctccatggatgttcagttctataacctggggctgctc
atcatcgatgaagagcagaagtttggcgtcgaattaaaagagcggctcaaacggtccaat
caaaacgtcgacgtgctcagtatgtctgcgaccccgatcccccggacactgcacatgtcg
ttggtcggagtgcgagacatttcgaatttggaaacggcccccgaggagcgaatggcggtc
gagacgcgagtggcccgcttcgatgaacatttgattcgcaatgcgatcctgcgggaactt
aatcgggacggacaagtctacttcgttcacaatcgcatcgaagatatgcccgtactcttg
tcgcgattgcagaggatcgttccggaagctcggatcttggtcgggcacggtcaaatggag
gaaggggcactcgagcaggtcatggtggacttcatcgaacatcgcgctgacattcttttg
gccacgaccatcatcgaaagcgggttggacatcccgaatgccaataccatgttcatcgac
gaagcagaccgttacggcctttccgagctccatcaattacgagggcgggtgggacgctac
aagcatcaggcctactgctacctcctggtggacaaacgcaaacatcttagccccgactct
gcacgacgactccatgcgatcgaagagttctctcaactcggtgccggatttgggatcgcg
atgcgcgatttggaaattcgcggtgccggcaacttgctcggcacccagcaaagcggacac
atcgccgccgtcggatacgagctgtattgccagttgttggagaacgccgttcgtgaactg
accaaacagccgcagaagctggagatcaccgtcgaattgaacatccccattgaagcctat
ttgccatcggaatatgttccggagatgcggcacaagatcgacatttaccgtcggttgagc
cggatccagagcattcaatcgatcgaggagatcaagcaggaattggaggatcgttttgga
aaacttccacctcccgtggaacggttgctcgccgtttcccagctccgcatggatgcaacg
atttggtctatccagtacgtcggaatcgaagacgagttcctagtcttccactacaccgac
cgcaatcgtgccgaacagctggcaaaaaaacacaacggtcggctgcgaatcgtggaccag
accagctgctattggccgttgcgccctgataaaccccagcctcaacgggggacggccgcg
gagcctatttggagacgtacaccggtcgagcccacgcagccagcgaaaatcgaacctccc
gaaccgatcgaaaagctcattcaaaggaccgatttgctcgcattgctccaatccatcttg
cagctctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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