KEGG   Pirellula sp. SH-Sr6A: VN12_08805
Entry
VN12_08805        CDS       T04360                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VN12_08805 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pir03019]
    VN12_08805 (rnr)
   03016 Transfer RNA biogenesis [BR:pir03016]
    VN12_08805 (rnr)
Enzymes [BR:pir01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     VN12_08805 (rnr)
Messenger RNA biogenesis [BR:pir03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     VN12_08805 (rnr)
Transfer RNA biogenesis [BR:pir03016]
 Prokaryotic type
  tRNA degradation factors
   VN12_08805 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB Rrp44_S1
Other DBs
NCBI-ProteinID: AMV32209
UniProt: A0A142XYX8
Position
complement(2109652..2111991)
AA seq 779 aa
MNSESIAQQVLQYVFSEEYRPSKPKAIHKKLKLPEESYRDLRRAIKKLVREGRILFGANH
LVLRPANRSAPTPDVETEIALAESISPRRRKHSKEDGRSEPVGIYRAAPKQLYGFVKLPR
VAGQSLTDEVFIPPRYTKGAMEGDTVRIQVTLQGVERTEGKVLEIVSRAKREFAGTFQMV
DGQAMVWLDGANLSHAVHIGDIRGLPVNNDDKIIVELVQFPDLFQPGEAVILRVLGSNRN
PAVDTQAVMHQFGLIEEFPPEAIDVAREQADRFNENEIPEGRTDLTQIPTLTIDPIDARD
FDDAISLAKNEKGNWELQVHIADVSYFVPAGSPLDVEAQRRATSVYLPDRVIPMIPETIS
NHLASLQPDRNRLAKTVFMEYTPEGTLLHAKVFNSVIRNQHRFNYEQIDQYLAEPESWRE
KLKPEIFQLVGDMHSLAMLLRRLRNEKGSLELTLPEVKIDLDKLGKVKGAHLVHHTESHQ
VIEEFMLAANQAVASWLDSLELPFLRRAHAPPNRLKLRQLNQFVRALGIPAENMENRFEI
QRVVQAVKGKTTEYAVNYAILKSMSKAIYQSAFERHYALDMTHYCHFTSPIRRYPDLVVH
RIVQKLIDGEPAKENEDVLERLGEHCSAMEQNAESAERELIRVKLLHFLSKKQGELMSGV
VAGVKSNGLTVRAIEVPIDGLVAVSDLPADRYHFDRETHTLEGFRSGNRYRLGDELIVRI
DKIDMVRRQLHFKLEKVTHHSEVSPYKGKRREEGSRSNRDLERRFRGDPYAKKKGRRKK
NT seq 2340 nt   +upstreamnt  +downstreamnt
atgaattcagaatcgattgcacaacaagtccttcagtatgtattttctgaagaataccgg
ccctctaaacccaaagcgattcataagaagctaaagcttcctgaagagtcgtaccgcgat
ttgcggcgagcgatcaaaaagcttgtgagggaaggtcgcattctttttggcgccaaccac
ttggtcctccgccctgccaaccgttccgctcccaccccggatgtcgagaccgaaattgca
ttggcggaatcgatcagccccaggcgtcgcaaacatagcaaagaggatggtcgcagcgag
ccggttggaatctaccgggctgcccccaagcagctctacgggtttgtgaaactcccacgc
gtcgccggtcagtcgctgaccgatgaggttttcatccccccacggtataccaaaggtgcc
atggagggagatacggttcgcattcaggtcactctccaaggggtggaacggaccgaagga
aaggttttggaaatcgtctcgcgtgcgaaacgtgaattcgctgggacttttcaaatggtc
gatgggcaagcgatggtttggctcgacggagccaacctttctcacgccgtccatatcggt
gacattcgcgggttgcccgtcaacaatgacgataaaatcattgtcgaactggttcagttt
cccgatctctttcaacctggggaagcagtcatcctgcgtgttttggggagcaaccgcaat
ccagcggtcgatacccaagcggttatgcaccaattcggcttgatcgaagagttcccgccc
gaagccatcgacgtcgcgcgagaacaggccgatcgattcaacgaaaacgagatccctgag
ggcagaaccgatctgacccagattccgaccctcacgatcgatcccatcgacgcgagggac
ttcgacgatgcaatctcgcttgcgaaaaacgaaaaaggcaactgggaactccaagtccac
attgccgatgtgtcgtatttcgtgccagcgggtagtccgctggatgtcgaagcgcaacgt
cgggcgaccagcgtctatctgcccgatcgcgtcattccgatgatcccagaaaccatcagc
aatcatttggcgtccctccagcctgatcgcaatcgtttggccaagaccgtcttcatggaa
tacacgccagaagggactctgctgcacgccaaggtcttcaatagcgttattcgaaatcaa
caccgattcaactacgaacaaatcgaccagtatctggcggaaccggaatcctggcgagag
aaactcaagccggagatttttcaactggtcggcgatatgcacagcttggcaatgctcctg
cgacgtctgcgcaacgaaaagggctcgctcgaactgactctcccagaggtcaaaatcgac
ttggacaaactcgggaaagtgaaaggtgcacatctggtccaccacaccgagagccatcaa
gtcattgaggagttcatgctggcggcaaaccaagcggtcgcttcgtggctcgactccctc
gagcttccgtttttgcgaagagcccacgctccaccgaaccgattgaagcttcggcaactc
aatcaattcgtccgtgcccttggaattcccgcagaaaacatggagaaccgtttcgaaatc
caacgggttgttcaagccgtcaaaggaaagacgaccgagtacgcggtgaactatgccatt
ttgaaaagcatgtccaaagcgatttatcaatcggctttcgaacgacattacgcgttggac
atgacccactactgccacttcacgagccctattcgacgctaccctgacttggtagtgcat
cgcattgttcagaaactgatcgatggcgaaccggcgaaagagaatgaagatgtgctggag
cgtctaggggagcattgcagcgcgatggaacagaatgcggagtctgctgaacgggagttg
atccgcgtgaagttgctccacttcttgtcgaagaagcagggagaactgatgagtggagtg
gtagctggcgtgaaatccaacggtttgaccgtacgggcgattgaagtcccgatcgatggg
ctggtcgcagtgagcgatttgccagcggatcgctatcatttcgatcgcgaaacccacacg
ctcgaaggtttccggagcgggaaccgctatcggctcggtgatgaactgatcgtgcgtatc
gacaaaatcgacatggtgcgccgccaacttcatttcaagctagagaaggtcacccaccac
agcgaagtttcgccttacaaaggaaaacgccgagaggaaggttcccgttccaatcgagac
cttgaacggcgattccgaggcgatccctatgccaaaaagaagggacggcgcaaaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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