KEGG   Pseudomonas knackmussii: PKB_0645
Entry
PKB_0645          CDS       T03081                                 
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
pkc  Pseudomonas knackmussii
Pathway
pkc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pkc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PKB_0645 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pkc03021]
    PKB_0645 (rpoA)
   03400 DNA repair and recombination proteins [BR:pkc03400]
    PKB_0645 (rpoA)
Enzymes [BR:pkc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PKB_0645 (rpoA)
Transcription machinery [BR:pkc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PKB_0645 (rpoA)
DNA repair and recombination proteins [BR:pkc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PKB_0645 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: CDF82013
UniProt: A0A024HBZ9
Position
679600..680601
AA seq 333 aa
MQSSVNEFLTPRHIDVQVVSQTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLAKKGSGVVTAADIQLDHD
VEIVNGDHVIAHLADNGALNMKLKVARGRGYEPADARSSDEDESRSIGRLQLDSSFSPVR
RVAYVVENARVEQRTNLDKLVLDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VEEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgcagagttcggtaaatgagttcctgaccccccgccacatcgatgtgcaggtggtcagc
caaacccgcgccaagatcactctcgagcctctcgagcgtggtttcggccataccctgggc
aacgcgctgcgtcgcatcctgttgtcctccatgcccggctgtgcagtggtcgaggccgag
atcgacggcgtactccacgagtactccgcgatcgaaggtgtgcaggaagatgtcattgaa
atcctgctcaacctgaaaggtctggccatcaagctgcacggccgtgacgaagtgacgctg
accctggcgaaaaagggctcgggtgtggtgaccgctgccgatattcagctggatcatgat
gtcgagatcgtcaacggtgaccatgttatcgcccacctggccgataacggtgcgctgaac
atgaagctgaaagtcgctcgtggccgtggctacgagccggctgatgctcgttcgagcgat
gaagacgaaagccgtagcattggccgtctgcagctcgattcctcgttcagccccgtacgt
cgtgttgcctacgtggtcgagaacgcccgtgtcgaacagcgtaccaacctggacaagctg
gtcctcgatctggaaaccaacggcaccctggaccctgaagaggctatccgtcgcgccgct
accatcctgcaacagcagctggcagcgttcgtggacctcaagggtgacagcgagcctgtc
gttgaagagcaggaagacgagatcgatccgatcctgctgcgtccggtcgatgacctggag
ctgaccgtccgttcggccaactgcctgaaggcggagaacatctactacatcggtgacctg
attcagcgcaccgaagtagagctgttgaaaactccgaacctgggcaagaagtccctgacc
gaaatcaaggacgtcctggcctctcgtggtctgtccctcggtatgcgcctcgataactgg
ccgccggcaagtctcaagaaagacgacaaggctactgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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