KEGG   Pseudomonas koreensis: AYO71_21750
Entry
AYO71_21750       CDS       T04647                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pkr  Pseudomonas koreensis
Pathway
pkr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AYO71_21750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pkr03019]
    AYO71_21750
   03009 Ribosome biogenesis [BR:pkr03009]
    AYO71_21750
Enzymes [BR:pkr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AYO71_21750
Messenger RNA biogenesis [BR:pkr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AYO71_21750
Ribosome biogenesis [BR:pkr03009]
 Prokaryotic type
  rRNA helicases
   AYO71_21750
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 BscB_a-b
Other DBs
NCBI-ProteinID: AMT90039
Position
complement(4870755..4872428)
AA seq 557 aa
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPST
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgacccaggaaaccggcggattcgccgcttttaatctcaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gcactgcctatcctgcaccgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgagagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtcaccgttgtggctgtctacggcggcgcgccgatgggcccgcaactcaag
gcaatccgtaatggcgcacagattgttgtcgctactccgggtcgtctgtgcgaccacctg
cgtcgcgacgagaaagtcctgtcgactgtgaaccatctggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggctctgccatcgacc
cgccagaccgtgctgttctcggcgaccctgccgcagtcgatccgcgccattgccgaacgc
catctgcgcgatccgcaacacgtcaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaaaacctcggccgtgctcagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagccactctggac
ctggccagcgccctcgacgccaaaggctacaaagccgccgcgttgaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctgaaagatggccgtctggacatcgttgtc
gccaccgacgttgctgcccgtggtctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgcgtaaccggtcagaaagttgccgaagtacgcctgccagacgctcaagccgttctc
gatgctcgcatcaagaaactgaccaacagcctttcgccgctggttgctgatgccgaatcg
actcacggtgagctgctcgaccgcctgaccgccgacatcggttgcaccccgcgtgctctg
gctgctgcgctgctgcgcaaagccaccaatggtcaagcgctgaacctggccgcaatcgag
aaggaacgtccactggtgccgaacaacgcaccgcgtggcgaccgtcctgagcgttccggt
gatcgtcctgatcgtggtgaccgcgagcgtcgcgcgccaatgcctttgggcgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgcgaaaaacctgctgggc
gccatcctcaacgaaggcggtctggcccgtgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagaaggtctggaaaaactcctgaccaaactgaag
gacactcgcgtggccggtaagcagctcaagctgcgtcgctaccgcgaagattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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