KEGG   Parvibaculum lavamentivorans: Plav_3324
Entry
Plav_3324         CDS       T00580                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pla  Parvibaculum lavamentivorans
Brite
KEGG Orthology (KO) [BR:pla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pla03016]
    Plav_3324
Enzymes [BR:pla01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Plav_3324
Transfer RNA biogenesis [BR:pla03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Plav_3324
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: ABS64928
UniProt: A7HYE5
Position
3558837..3560120
AA seq 427 aa
MSYPLEKKKALLNVRTRYRHPWLRPYSDGMPATDATGSAIELFMEIITTNEALRAACDRL
STAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLAPFYALMKNRNVVKV
FHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLVRKLAGGSVDKSSRFTD
WSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWVAEEMAVLQDPETYAMRPEN
AWKRVKARFRGQRGLAVLVEVAAWRERQAQERDLPRSRVMKDDALAEIATQIPRTISDLD
GLRAVPKGFSNSRSAASLMEAVERGLAMKEEDIPVVEGPEPLPPGIGPLVELLKVLLKIK
CEEHDVAQKLVANVADLELIAAHSEADVGALKGWRRELFGEDALRLKRGELAIGVKGKRI
VLIETKR
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgtcgtacccacttgaaaaaaagaaggctttacttaatgtccggacgcgatatcggcac
ccttggctccgcccctattcggacggcatgcccgcgacagacgccacgggatcggctata
gagcttttcatggaaatcattacgacgaatgaggccttgagggccgcctgcgaccggctc
tccacagccggctttgtcacggtcgataccgaattcatgcgggacgcgaccttttggccg
attctctgcctgatccagctggcgggaccgagcgacgaacttatcgttgatcccttggcc
cccgatcttgacctcgcccccttctatgcgctgatgaagaatcggaacgtggttaaggtt
tttcacgccgcgcggcaggacatcgaaatcttctgccatgagggcaaggcgatccccgac
cccctgttcgatacacaggtcgcggctatggtttgcggtttcggggattccgtcggctac
gaaacactggtccgcaagcttgccggcggcagtgtcgacaagtcatcgcgctttacggac
tggtcgcggcggccgctttccgacaagcagcttcaatacgcgatggccgacgtcacctat
ctccgcactatttacgaggtactggcgaagcgactgacccatacgaagcgtgcccattgg
gtggccgaggaaatggcggtactccaggatcccgaaacctatgcgatgcggccggagaat
gcatggaagcgcgtcaaggcccgattccgcggccagcgtggtctcgcggtgcttgtcgag
gtggcggcgtggcgcgaacgtcaggcacaagagcgcgacctcccgcgctcacgcgtgatg
aaagatgacgctctggcagaaatcgcgacgcaaatcccgcgcacaatctctgacctcgat
gggcttcgcgccgtcccgaagggcttctcaaacagccgctcggcggcaagcttgatggaa
gccgtcgagcgcggtctcgccatgaaggaagaggatattccggtcgttgaggggccggaa
cctctgccccccggcatcggcccgttggtcgaactcctcaaggttctcctcaagatcaaa
tgtgaagagcacgacgttgcgcaaaagctcgtagccaatgtcgcagacctcgaactcatt
gccgctcattcggaagcagatgtaggggcgctcaagggctggcggcgggaactcttcggt
gaagacgcgctacgccttaagcgcggagaacttgccatcggcgtcaagggtaagcggatc
gtgctgatcgagacgaagcgatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (58)   

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