KEGG   Planctomyces sp. SH-PL14: VT03_08405
Entry
VT03_08405        CDS       T04354                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pls  Planctomyces sp. SH-PL14
Pathway
pls03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pls00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VT03_08405 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pls03021]
    VT03_08405 (rpoB)
   03400 DNA repair and recombination proteins [BR:pls03400]
    VT03_08405 (rpoB)
Enzymes [BR:pls01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VT03_08405 (rpoB)
Transcription machinery [BR:pls03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VT03_08405 (rpoB)
DNA repair and recombination proteins [BR:pls03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VT03_08405 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RnfC_N Peptidase_M23
Other DBs
NCBI-ProteinID: AMV17901
UniProt: A0A142WTD8
Position
complement(2138037..2141744)
AA seq 1235 aa
MAISSERILKMPEVRHFGQIQGQFDLSDLTQIQTESYARFLQFEKRPDQRKNQGLEEILR
EVFPVESYDGLHRLEYIRYELGKPRYTPTECRQLRLTYGRPFRVWLRLVKEQPIEEEVYL
GDMPIMLGGGEFIINGAERVVVSQLHRSPGVDFVKSDEPDRKGYSCRIIPERGSWIELAV
SKKETLGVRIDQSGRFSAMTLLRAMSPEYSTSTDLLKLFYKVEHVKVKAGGDDSLVGKFA
ADDIAYPSGERVGEIITEVGHRITKSNAQEIIEAGVKAVDLIGEGEDSLILSSVIEDSTN
SHEEALLKIYQRLRPGNPPQLEKAMALFKEKFFDVNRYRLGRVGRFRINRKFGQDISDEE
MTLQPLDFINSIRYLVKLRVHDQTAHVDDIDNLGNRRLRTIDELASEELRKGFLKLRRTV
QERMSMKEMENMTPRTLVNPKSVSAAIEFFFGRSELSQVVDQTNPLSMITHERRLSALGP
GGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIYSKVDDYGFLITPYRKVV
SGKIGEDVEWLRADEEANVIVAPADTVVENGKIAQERVLARWRNDVHWVEGKAVQYIDVA
PAQMVGISAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGLEDELPKYSGMVP
RAERAGKVTYVDADRVEIEGKNYPLRKYTGLNERTCLNQKPIVAVGQRVKKGEILADSAA
TRNGVLALGRNVLVAFMSWEGFNFEDAIILSERLVKEDVYTSIHIDEFDVEIRETKLGRE
EFTRDIPNVSEKALRHLDENGIVHVGTRVRPGDILVGKVTPKAKTELTPEEKLLAAIFGK
AGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLSEADRKKFDQDVKKVEQVGQTAVAEAFL
AFVSEMDKVLGKHLTDDDGRELRSVTDHKFLSEYARKFPSAFETLDVRSPQKQADARKLF
KESWPTVDDAIDDADLKLNSMKRGDELPNGVLQMVKVYVSSKRQISVGDKMAGRHGNKGV
ISKVLPIEDMPYLDDGTPVDIVLNPLGVPSRMNVGQILETHLGWAASKIGYRCICPVFDG
CSPEVMAEALKEAELPEDGKVRLNDGRTGTTFEQKTTVGIIYMLKLHHLVDDKVHARATG
PYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYESMV
KGENTLEAGTPASFDVLMNEIRGLCLNLQLEKAKV
NT seq 3708 nt   +upstreamnt  +downstreamnt
atggcaatctcttccgaacgcattctcaagatgccggaagttcggcactttggtcagatc
caggggcagttcgacctgtccgatctgacgcagatccagaccgagtcctacgcccggttt
ctgcagttcgagaagcgtccggatcagcggaagaaccagggcctcgaagagattctccgg
gaagtgttcccggtcgagagctatgacggcctgcaccggctcgaatacatccgttacgaa
ctcggcaaaccccgctacaccccgacggaatgccgtcagctccgcctgacctacggccgg
ccgttccgcgtctggctgcggctcgtcaaggagcagccgatcgaggaagaagtgtacctc
ggcgacatgccgatcatgctcggcggcggcgagttcatcatcaacggtgccgagcgcgtc
gttgtcagccagcttcaccgttcgcctggcgtcgacttcgtcaagagcgacgagccggac
cgcaagggatacagctgccgcatcattcccgagcgcggaagctggatcgagcttgccgtc
agcaagaaggaaacgctcggcgtccgcatcgaccagagcggccggttctcggcgatgact
ctgcttcgggccatgagccccgagtattcgacgagcacggacctcctgaagctgttctac
aaggtcgagcacgtcaaggtgaaggcggggggcgacgactcgctcgtcggcaagttcgcc
gcggacgacatcgcctatccgtcgggcgagcgggtcggtgagatcatcacggaagtcggc
caccgcatcacgaagtcgaatgcccaggagatcatcgaagccggcgtcaaggcggtcgat
ctgatcggcgaaggggaagactcgctgatcctgagctcggtgatcgaagactcgacgaac
agccacgaagaggcgctgctcaagatctaccagcggctgcggcccggcaacccgccgcag
ctcgagaaggcgatggcgctcttcaaggagaagttcttcgacgtcaaccggtaccggctc
ggccgcgtcggccggttccgcatcaaccgcaagttcggccaggacatctccgacgaggag
atgaccctccagccgctcgacttcatcaactcgatccggtacctcgtcaagctgcgggtc
cacgaccagacggcccatgtcgacgacatcgacaacctggggaaccgccgtctccgcacg
atcgacgagctcgcctcggaagagctccgcaagggtttcctgaagctccgccgcaccgtt
caggagcggatgagcatgaaggaaatggagaacatgaccccccggacgctcgtcaacccg
aagagcgtctcggcggcgatcgagttcttcttcggtcggagcgaactgtcccaggtcgtc
gaccagacgaacccgctctcgatgatcactcacgagcggcgcctgtcggccctcggtccc
ggcggtctcaaccggaagcgggcgggcttcgaagtccgcgacgtgcacatctcgcactac
ggccgcatctgcccgatcgagacgcccgaaggtacgaacatcggcctgatctcgagcctc
agcatctattccaaggtggatgactacggcttcctgatcacgccgtaccggaaggtggtg
agcggcaagatcggcgaagacgtcgagtggctgcgggcggacgaagaagcgaacgtgatc
gtggctccggccgatacggtcgtcgagaacggcaagatcgcccaggaacgcgtcctcgcc
cgctggcggaacgacgtgcactgggtggaagggaaggcggttcagtacatcgatgtcgcc
ccggcccagatggtcgggatctcggccggtctgatcccattcctcgagcacgacgacgcc
aaccgggccctgatgggttcgaacatgcaacggcaggcggtgccgctcctggtcaccgag
ccgccgatcgtcggcaccggtctcgaagacgagttgccgaagtactccgggatggttccc
cgcgccgaacgggcgggcaaggtgacctacgtcgacgcggaccgcgtcgagatcgaaggg
aagaactacccgctccgcaagtacaccggcctcaacgagcggacctgcctcaaccagaag
ccgatcgtcgccgtcggccagcgggtcaagaagggggagatcctcgccgacagtgccgcg
acccggaacggcgtgctggccctcggccggaacgtcctcgtcgccttcatgtcgtgggaa
gggttcaacttcgaagacgccatcattctgtccgagcggctcgtgaaggaagacgtctac
acgtcgatccacatcgacgagttcgacgtcgaaatccgcgagacgaagctcggccgggaa
gagttcacccgcgacatcccgaacgtcagcgagaaggcgctccgccatctcgatgagaac
gggatcgtccacgtcggaacgcgcgtccgccccggcgacatcctcgtcgggaaggtcacg
ccgaaggccaagaccgagctgacgccggaagaaaagctcctcgcggcgatcttcggcaag
gccggggaagacgtgaagaacgagtccctcgaagtcccgtcgggcgtcgaagggatcgtc
atccacaccgagaagttctcgcggcggatgagcctgtcggaagcggaccgcaagaagttc
gaccaggacgtcaagaaggtcgagcaggttggccagacggccgtggccgaagccttcctg
gcattcgtttccgagatggacaaggtccttggcaagcacctgaccgacgacgacggccgc
gagctccgctcggtgacggaccacaagttcctctccgagtacgcccgcaagttcccgtcg
gccttcgagacgctggacgtccgcagcccgcagaagcaggccgacgcccgcaagctcttc
aaggagtcgtggccgactgtcgacgacgcgatcgacgacgcggacctcaagctcaacagc
atgaagcgcggggacgaactcccgaacggcgtgctgcagatggtcaaggtctacgtctcc
tcgaagcggcagatctccgtcggggacaagatggccggacggcacgggaacaagggggtc
atctccaaggtcctgccgatcgaagacatgccgtacctcgacgacggcacgccggtcgac
atcgtcctcaacccgctgggggtgccgagccgtatgaacgtcggtcagatcctcgagacc
cacctggggtgggccgcctcgaagatcggctaccgctgtatctgcccggtgttcgacggc
tgcagcccggaagtcatggccgaggctctcaaggaagccgagctgccggaagacggaaag
gtccgcctgaacgacggccggacgggaacgacgttcgagcagaagacgaccgtcgggatc
atctacatgctcaagctgcaccacctcgtcgacgacaaggtgcacgcccgggcgaccgga
ccctactcgctcatcacccagcagccgctgggcggaaaggcccgcttcggcggtcagcgg
ttcggggagatggaagtgtgggccctcgaagcgtacggggcggcctacatcctccaggag
ctcctcaccgtcaagagcgacgacgtggaaggccggaccaagatttacgagtcgatggtc
aagggagagaacacgctggaagcgggcacccccgccagcttcgacgtgctcatgaacgaa
atccgcggcctgtgcctcaatctccagctggagaaggccaaggtctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (34)   

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