KEGG   Planococcus sp. MB-3u-03: CW734_01775
Entry
CW734_01775       CDS       T05387                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
plx  Planococcus sp. MB-3u-03
Pathway
plx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:plx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CW734_01775 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plx03021]
    CW734_01775 (rpoC)
   03400 DNA repair and recombination proteins [BR:plx03400]
    CW734_01775 (rpoC)
Enzymes [BR:plx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CW734_01775 (rpoC)
Transcription machinery [BR:plx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CW734_01775 (rpoC)
DNA repair and recombination proteins [BR:plx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CW734_01775 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AUD12603
Position
119795..123400
AA seq 1201 aa
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDALKEELKSAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVLIAYQTGHVHLHTRIAVQ
AGSVSNPTFTEEQNKMLLLTTVGKVIFNEILPKSFPYINEPTDYNLQVETPAKYFVPTTT
DVRKHIQESELVTPFKKKILGEIIAEVFKRFHITETSRMLDRMKSLGFKYSTQAGITVGV
ADIVVLPDKGEILIEAQNNVDKVMKQFRRGLITEEERYTRVISYWSNAKDIIQEKLMASL
DTLNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELE
ERIVGRHAKKTVRHPETKEVIVERDALITQDLARLVIEAGIKEVTIRSAFTCNTKHGICK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTITEIDEIREGQKEITIQGDVETRKYLAPYNARLKVQVDDTIQR
GEVLTDGSIDPKQLLQVKEVQSVQLYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTDLLPGSLLDIHQFTEANEKAVLAGNMPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIEIEQSEKAQQEEIVGSE
S
NT seq 3606 nt   +upstreamnt  +downstreamnt
ttgatagatgtaaataattttgagtatatgaaaatcggattggcatcacccgataaaatt
cgctcatggtcctatggggaagtcaagaaaccagaaacaatcaactaccgtacgttaaag
cctgaaaaagacggtttgttctgtgaacgtattttcggtcctacaaaagactgggaatgc
cattgcggaaaatacaaacgcgtccgttataaaggtgtcgtctgtgaccgctgtggcgtc
gaagtaacccgttcaaaagtgcgccgtgagcgcatgggccatatcgagcttgcagcaccg
gtttcccatatttggtatttcaaaggaattccaagccgcatgggccttatcttagatatg
tccccgcgttctttggaagaagttatctattttgcttcttatgtagtgatcgatccggct
gatacgccgctcgagaaaaaacaactgctttccgaaaaagaatatcgtgcataccgcgat
aaattcggcaagaaattccaagccgcaatgggtgctgaagcaatcaaacgtttgcttcag
gaaattgacttggaacgcgaaacagatgcgttgaaagaagaacttaaatctgcgcaaggc
cagcgccgcacgcgtgcgatcaagcgccttgaagtagttgagtctttccgcaactctgga
aacaacccggattggatgatcttggatgtccttcctgtcatcccgccggaattgcgtccg
atggttcagcttgacggcggccgctttgcgacttctgacttgaacgacctttaccgccgc
gtcatcaaccgcaacaaccgcctcaagcgtttgcttgaccttggtgcgccaagcatcatc
gttcagaacgaaaaacgcatgcttcaagaagcggtcgatgcattgattgacaacggtcgt
cgcggccgtccggttacaggtcctggtaaccgtccattgaaatctctttctcacatgttg
aaagggaaacaaggacgcttccgccagaacttgctcggaaaacgtgtcgattattccgga
cgttctgtaatcgtcgttggaccgaacttgaaaatgtaccaatgcggcttgcctaaaggc
atggcgattgaactcttcaagccgtttgtcatgaaagaattggttgaacgtgggcttgct
cataacatcaagagcgcgaagcgtaaaatcgagcgtctccattcggaagtttgggacgtg
ctagaagatgtcatcaaggagcacccggttcttttgaaccgcgcaccgacgcttcacaga
ctcggtattcaagcatttgaaccgacactcgttgaaggtaaggcaatccgccttcacccg
ctcgtttgtacagcttataacgctgactttgatggtgaccaaatggctgttcacgtaccg
ctttcatctgaagcacaagcggaagctcgtcttcttatgcttgcagcacagaacatcttg
aacccgaaagatggtaaaccggtcgtaacgccttctcaggatatggttctaggaaactac
tacttgacgcttgagcgcaaaggcgcgacaggcgaaggggctacgttctccgggccggaa
gaagtgctgatcgcataccaaactggacatgtgcacttgcacacgcgcattgcggttcaa
gccggctctgttagcaacccaacgtttacggaagaacaaaacaaaatgcttcttttgact
acggtcgggaaagtcattttcaatgaaattcttccgaaatcgttcccttatatcaatgaa
ccgactgattacaacctgcaagtggaaacgcctgcgaaatacttcgtccctacaacgacg
gatgttcgcaagcatatccaggagtcagagcttgtaacgccgttcaagaagaaaatcctt
ggggaaatcattgcagaagtattcaaacgtttccatattacggaaacttcccgtatgctt
gaccgcatgaagagcctcggattcaaatattcaacacaagccggcatcacagtcggtgtt
gcggatatcgtcgttttgcctgacaaaggtgaaatcctaattgaagcccaaaacaatgta
gataaagtgatgaagcaattccgccgtggcttaattacggaagaagagcgctacacacgc
gttatctcatattggagcaatgcaaaagatatcatccaggaaaaattgatggcatccctt
gatacgctgaacccgatctacatgatgagtgattccggagcgcgtggtaacgcgtccaac
ttcacgcagcttgcgggtatgcgcggactcatggccaacccggccggccgcatcattgaa
cttccgatcaaatcttcattccgtgaaggtctgacggtacttgaatacttcatctcgact
cacggtgcacgtaaaggtcttgccgatacagcacttaaaacagctgactccggttacttg
actcgccgtcttgtcgatgttgcacaagatgcaatcgtacgcgaaaatgattgcggaact
gaccgtggtttattggttggcgcactcatggaaggtacggaagtcattgaagagcttgaa
gaacggattgtcggccgtcacgctaagaaaacggtccgtcacccggaaacaaaagaagtg
attgtagaaagagacgcacttattacacaagatctggctcgcctcgtaatcgaagccggc
atcaaagaagtgacgatccgctctgcctttacttgtaatacaaaacacggcatttgcaaa
aaatgttacggtacgaaccttgcaacaggcgacgaagtggaagtcggcgaagcagtggga
atcatcgctgcccagtcaatcggtgagccgggtacacagctcacgatgcgtacgttccac
acaggcggtgtagcaggagacgatatcacacaaggtttgccgcgtatccaagaaatcttc
gaatccagaaatccgaaagggcaggctgtcatttctgaaatcaccggtactattaccgag
attgatgaaatccgcgaaggccagaaagaaatcacgattcaaggtgacgtagaaacacgt
aaatacttggcgccttataatgcgcgtttgaaagttcaagtagatgatacgattcagcgc
ggtgaagtgctgacagacggctctattgatccgaagcaattgcttcaagtcaaagaagtc
caatctgtacaattgtatctattgaaagaagtccaaaaagtttaccgcatgcaaggggta
gaaatcggcgataagcacgttgaagttatggtgcgtcaaatgttccgtaaagttcgcgtc
attgaagccggggatactgacttgctgccaggttctcttcttgatattcaccagttcaca
gaagcaaacgaaaaagcagtgcttgccggcaatatgccagcaactagccgacctgtcatc
ctcgggatcacgaaagcttccctggaaacagaatcgttcttgtctgctgcgtccttccaa
gaaacgactcgcgtccttaccgatgcggcgatcaaaggaaaacgcgatgagcttctcggc
ctgaaagagaatgtcatcatcgggaaactggttccagcagggactggcatgcaacgctac
cgccaaatcgaaatcgagcaaagcgaaaaagcccagcaagaagagatcgtcggaagcgaa
tcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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