KEGG   Paraphotobacterium marinum: CF386_02970
Entry
CF386_02970       CDS       T05093                                 
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
pmai  Paraphotobacterium marinum
Pathway
pmai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CF386_02970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmai03019]
    CF386_02970
Enzymes [BR:pmai01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CF386_02970
Messenger RNA biogenesis [BR:pmai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CF386_02970
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SLFN-g3_helicase
Other DBs
NCBI-ProteinID: ASK78082
UniProt: A0A220VD26
Position
large:541583..542854
AA seq 423 aa
MTDKKFSELNLQLNILEALHESNFTKCTNIQSKALPLLLEGKDVIAQSQTGSGKTLTFLT
ATYNYLQLQNQLQQTETLSPRALILAPTRELALQVQKDAQIFDKFTKFKTTLLVGGESIE
KQKLNLTHSKDIIIGTCGRVTDFIKQGLLDLSLLEVVVLDEADRMLDLGFIKDIRFIFKQ
MPPPSARMTMLFSATFSHNIKEMAYQYMKSYEFINVNKKVHNNMIDEELFYPSNEHKLPL
LQTLIEEDWPDKAIIFANTKIKSEEIFNALNADNHRVGLLTGDIPQKKRLQTLDSFTLGH
LDILVATDVAARGLHIPDVTHVYNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDFAI
NLTNIEQYINHNIPVTEYDPEALLTNLPKINLNKETASSRNYKKTQINKNRRNYTKRNYG
KRK
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgacagataagaaattttctgaactgaaccttcagttaaacatattggaagctttacac
gaaagtaactttaccaaatgtacaaatatccaaagtaaagcattacctcttttgcttgaa
ggaaaagatgttatcgcccaatcacaaaccggatccggaaaaacattaacattcctaaca
gcaacttataactaccttcaattacaaaatcaattacaacagacagagactctctcaccg
cgtgctctaattctagcaccaaccagagaactagccctccaagttcaaaaagacgcccaa
atttttgataaatttacaaaatttaaaacaactttactggttggcggcgaatctattgaa
aaacaaaaactaaacttaactcattcaaaagatataataatcggaacttgtgggagagtg
actgattttattaaacaaggtctcttggatttaagtttattagaagtagttgttctagat
gaagcagacagaatgttagatcttggctttataaaagatattaggtttattttcaaacaa
atgccccccccatcagcgagaatgactatgttattttcagccacattctcacataacatt
aaagaaatggcctatcaatacatgaagtcatatgaatttatcaatgtaaataaaaaagtt
cataataacatgattgacgaggaattattctacccgtctaatgaacataaactcccactt
cttcaaactttgattgaagaagattggcctgacaaggcaattatttttgctaatactaaa
ataaaatctgaagagatatttaatgcattgaatgctgacaatcatagagtaggtttacta
actggagatatcccacagaaaaaacgccttcaaacactcgactcctttacgttaggacac
ttagatattctcgttgcaacagatgtagcagcaagaggacttcatattccagatgtaact
cacgtttataattttgacttgccagacgactgtgaggattacgttcatagaattggtaga
actggaagggctggggagagtggtcactctattagttttgcatgtgaggattttgcaatc
aatcttaccaatatcgaacagtatataaatcataatattcctgttacagaatatgatcca
gaagctctgttaactaatttaccaaaaataaacttaaataaagaaactgcaagcagtcga
aactacaaaaaaacacaaattaacaaaaatagaagaaattatacaaaacgtaactatgga
aaaagaaaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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