KEGG   Paraphotobacterium marinum: CF386_04125
Entry
CF386_04125       CDS       T05093                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pmai  Paraphotobacterium marinum
Pathway
pmai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CF386_04125 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmai03019]
    CF386_04125 (rnr)
   03016 Transfer RNA biogenesis [BR:pmai03016]
    CF386_04125 (rnr)
Enzymes [BR:pmai01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CF386_04125 (rnr)
Messenger RNA biogenesis [BR:pmai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CF386_04125 (rnr)
Transfer RNA biogenesis [BR:pmai03016]
 Prokaryotic type
  tRNA degradation factors
   CF386_04125 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB HTH_12 Casc1_C
Other DBs
NCBI-ProteinID: ASK78263
UniProt: A0A220VEB2
Position
large:765789..768077
AA seq 762 aa
MRKQNKIQKKTDPFKEREAKNYSNPVPSREFIVETISNCNQPVSKNLLLNLFSIKSDEEK
EAFRRRLKAMERDGQLVYYPGKKYCLPIENKIIEGTIQGHKDGIGILKKAYNDQDVLISQ
KQMVGLLHGDIVKVQIKAVTTRGMISCDLIEVVKFSNKPVVGRFFIEHNKKYVVSDDSRV
HGEFTVIDSLHNELSLGNVVVLEITKRATKNQVAEGKVIEVLGNEQDPGIEIDIALRKFD
IPYQWPKPLLKELDSIDKDTENGSNSNRIDLRNKPFITIDGEDARDFDDAVYCESKPSGG
WRLWVAIADVSHYIKKYSELDKEALKRGNSVYFPQKVVPMLPELLSNGVCSLNPNVNRLS
LVCEMTISKKGKLSGYKFYEGLIKSSARLTYNKVSLILDNDYKLLERYANNLPNIYHLHS
LYTELKKQKEIRGALEFDTNEPKFVFNEHKKIESIETIKRNDAHKIIEECMILANVASAK
FLLKNSSISGIYRVHDKPSDEKLSAFNQFLLERGLSLANHKEPKPSDYSNLNSILSSRTD
KEIIQTMLLRSLKQANYQTDNIGHFGLSLNEYTHFTSPIRRYPDLIVHRLIKSIIYNDEK
LKYSPDEIDYISEHCSTTERKADEATKDVAEYLKCEFISRHIGETFEGIISNVLPFGFFV
RIKDFHIDGLVHVTSLKAEYFHYNDVQQKLVGEKSSKTYSLGEDIRIKVLDVNIDSRNID
FCLAHDDLEKSTVIPKKKSIREKLKDGLIPNKKLVKKNKKRS
NT seq 2289 nt   +upstreamnt  +downstreamnt
atgagaaaacaaaataaaattcaaaaaaaaacagatcccttcaaggaaagagaagcaaaa
aattattcaaaccctgtacccagtagagagtttatagttgaaacgatttcaaattgtaat
caacctgtttctaaaaatctacttttaaatttattttcaatcaagagtgatgaagaaaaa
gaagcatttcgccgaagattaaaagctatggaaagagatggccagttagtttattatcca
ggaaagaagtactgtctaccaattgaaaacaaaattattgaaggcacaattcaaggacat
aaagatggtattggtattttaaaaaaagcctataatgaccaagatgttcttatctcacaa
aaacagatggtaggcctgctacatggtgatatagttaaagttcaaattaaagcagtaaca
actagagggatgatcagttgcgatttaattgaggtagttaaattttctaataaacctgta
gttggtagattttttattgagcacaataaaaaatatgttgtttctgatgatagcagagta
catggagagtttacagttatagatagtttacataacgaactaagcttgggaaatgtagtt
gtccttgagattacaaaaagggcaacaaaaaatcaagttgcagaggggaaagttattgag
gttcttggaaatgaacaagatcctggaatagaaatagatatcgctttaagaaaatttgat
attccctatcagtggccaaaacctctcttaaaagaacttgactctattgataaagacact
gaaaatggaagtaattcaaatcgaattgatttaagaaataagccttttataacgatagat
ggtgaagacgcaagagattttgatgatgcagtttattgtgaatcaaaaccctcaggtggt
tggaggttgtgggtcgcaattgctgatgtaagtcactatatcaagaaatattctgaactt
gacaaagaagctttaaaaagaggaaattcagtttattttccccaaaaagttgttcctatg
ttacccgaattactctctaatggtgtatgctcattaaatccgaatgtcaatcgtttatct
ttagtttgtgaaatgaccatttctaagaaaggaaaattgtcaggctataaattctacgaa
ggtttaattaagtcatcagctagattaacttacaataaagtaagtcttatacttgataat
gattacaaacttttagagcgatatgcaaataatttacctaatatttatcatttacatagc
ttatatacagagttaaaaaaacaaaaagaaataagaggcgctctagaatttgataccaat
gaaccgaaatttgtttttaacgagcacaaaaaaatagagtccattgaaacaataaaaaga
aatgatgcacataaaataattgaagagtgtatgattttagctaatgttgcttctgcaaaa
tttttattaaaaaacagcagcatatctggcatatatcgcgttcatgataaaccaagcgat
gaaaagctgagtgcgtttaatcaatttttattagaaagaggactatctcttgcaaatcac
aaagaaccaaaaccaagcgattactctaacttgaattcaattttatcgtctagaacagat
aaagaaataattcagactatgctgttacgttcattgaaacaagcaaactatcaaactgat
aatattggacattttggtttatccttaaatgaatatactcattttacttcgcctattaga
aggtatcctgatttaatagttcacagattaataaaatctataatttataacgatgagaaa
ttaaagtattcaccagacgaaattgactatatttcagaacattgttcaactactgagaga
aaggcagatgaagctacaaaagacgttgcagaatatttgaaatgtgagtttatatcacgg
cacatcggagaaacatttgagggtattatttctaacgtcctgccgtttggtttttttgtt
agaatcaaagattttcatattgatgggttagtgcatgtaacttctcttaaagctgagtac
tttcattataatgacgtacagcagaaacttgttggagaaaaatcaagtaaaacatactct
ttgggagaagatatacgtataaaagttttagatgtaaatatagatagtcgaaatatagat
ttttgtttggctcatgatgatttggaaaaaagcacagtaatccctaaaaaaaaatctata
agagaaaagctaaaagatggacttattccaaacaaaaagttagtaaaaaaaaataaaaag
agaagttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (92)   
   KEGG ORTHOLOGY (1)   
   RefGene (89)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (106)   

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