KEGG   Prochlorococcus marinus MIT 9215: P9215_17531
Entry
P9215_17531       CDS       T00598                                 
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pmh  Prochlorococcus marinus MIT 9215
Pathway
pmh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    P9215_17531 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmh03021]
    P9215_17531 (rpoC1)
   03400 DNA repair and recombination proteins [BR:pmh03400]
    P9215_17531 (rpoC1)
Enzymes [BR:pmh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     P9215_17531 (rpoC1)
Transcription machinery [BR:pmh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     P9215_17531 (rpoC1)
DNA repair and recombination proteins [BR:pmh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      P9215_17531 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Cas9-BH Pkinase_fungal
Other DBs
NCBI-ProteinID: ABV51366
CyanoBase: P9215_17531
UniProt: A8G6Y5
Position
complement(1497609..1499513)
AA seq 634 aa
MTNSNLRTENHFDYVKISIASPQRIMDWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVSHVWY
LKGIPSYVAILLDIPLRDVEQIVYFNCYVVLDPGDHKELKYKQLLTEDEWLEIEDEIYAE
DSIIENEPIVGIGAEALKQLLEDLDLNQVAEELREEITNSKGQKRAKLIKRIRVIDNFIA
TNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQKADDEVM
QVLQEVIDGHPILLNRAPTLHRLGIQAFEPKLVGGRAIQLHPLVCPAFNADFDGDQMAVH
VPLALEAQTEARMLMLASNNILSPATGEPIVTPSQDMVLGSYYLTALQPNYQKPEFGDNK
TTFASLEDVIFAFEDKRLSLHEWVWVRFNGEVEDEDEMRSPQKTQELEDGSKLEIWNLRR
DRFDSDNNLISRFVLTTVGRVVMNYTIIDSVSKT
NT seq 1905 nt   +upstreamnt  +downstreamnt
atgacaaacagcaacttaagaactgaaaatcactttgattacgtcaaaatttcaatagct
tctccacaaagaataatggattggggtcagaggacattgcccaatggacaagtagttggt
gaagttacgaaaccagagactattaactacaggacacttaaaccggaaatggatggattg
ttttgcgaaaagatttttgggccatctaaagattgggaatgtcattgtggaaaatataaa
agggtaagacatcgcggcattgtttgtgagagatgtggggttgaagtaactgaaagtaga
gttagaagacataggatgggttatataaaactagctgcgccagtttcccatgtttggtat
ttgaaaggaatccctagttacgttgcaatccttttggatattcctcttagggatgtagag
caaatagtttattttaattgttatgttgttttagaccctggtgatcataaagaacttaaa
tataagcaattactcactgaggatgagtggctagaaattgaagatgaaatttatgctgaa
gattcaattatcgaaaatgaacctattgttgggattggtgccgaggcactgaagcaatta
cttgaggatcttgatttaaatcaggttgctgaggagcttagagaagaaattactaatagc
aaagggcaaaagagggcaaaacttattaaaaggataagagttattgataatttcattgca
actaatgcaaaaccagaatggatggtattagatgcaatcccagttataccccctgatttg
agacctatggttcagcttgatgggggaagattcgcaacttctgatttaaacgatctatac
agaagagttataaatagaaacaatagactagctaggcttcaagaaattttagcccctgaa
attatcgtaagaaatgagaaaagaatgcttcaggaggcagttgatgctcttatagataat
ggaaggagaggtaggactgttgttggagcaaataatagagctcttaagtccctaagtgac
ataattgaagggaaacaaggaagatttagacagaatctccttggaaagcgtgttgactat
tcaggaagatctgtaatagttgtaggtccaaaattaaaaatgcatcagtgcgggctccca
aaagaaatggcgatagagctctttcaacctttcgtaatacatagattaatacgacaaaat
attgtaaataatattaaagctgcaaaaaaattaatacaaaaagccgatgacgaagttatg
caggtacttcaggaagttattgatgggcatccaattctattgaatagagcccctacgctg
catcgtttaggaattcaagcttttgaaccaaaattagttggaggtagagcaatacaactt
catcctttagtttgtcctgcattcaatgctgacttcgatggtgatcaaatggcagttcat
gtccctctagctttagaggcacaaactgaagcacgtatgcttatgttggccagtaataat
attctttcccctgctactggggaaccaatcgttactccatcacaagatatggttttggga
tcttattatctgaccgctttgcaaccgaattatcaaaaaccagaattcggagataataag
actactttcgcttcattagaagatgtcatttttgcttttgaagataaaaggctgagccta
catgaatgggtttgggttagatttaatggagaagttgaggatgaagacgaaatgcgtagt
ccacaaaaaactcaagagctagaggatggctcaaaattagagatctggaatttaagaaga
gacagatttgactctgataataatttaattagtagatttgtgttgacaactgttgggaga
gtggttatgaactacaccatcattgattctgtatctaaaacgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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