KEGG   Pseudomonas mendocina NK-01: MDS_0428
Entry
MDS_0428          CDS       T01473                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pmk  Pseudomonas mendocina NK-01
Pathway
pmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MDS_0428
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmk03019]
    MDS_0428
   03400 DNA repair and recombination proteins [BR:pmk03400]
    MDS_0428
Enzymes [BR:pmk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MDS_0428
Messenger RNA biogenesis [BR:pmk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MDS_0428
DNA repair and recombination proteins [BR:pmk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MDS_0428
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind ResIII SNF2-rel_dom
Other DBs
NCBI-ProteinID: AEB56459
Position
452563..454479
AA seq 638 aa
MSTLKRVFGFDKLRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISP
LLALMQDQLAFLHAHGIAAASIDSAQSREQAMEVMNRARSGELKILMISVERLKNERFRN
FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFGIAQVLLLTATATPKVIADMR
EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKMQRLQQWLAPRRGQASIVYVTQQKTAEQ
VAEHLARDGLAVSAYHAGMAHEVRESIQRRFMAGELECIVATIAFGMGIDKRDIRNVVHF
DLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVYGDTPELSGIRAVLDDLRV
VGTGGQWELMLNQLSELSNIRALPLKTLLVQLELRGIIAPRYAYFAEYRFKLLLDDEALL
GQFEGERRQFVEAILACSKRARTWSTLDFDALYQQYGAERARVVKALDYFQERGWLELES
KQMTEVYAVLDGDFDVDALANDLHAHFRSHEASEIARIQAMLALFESNECLSRRLALYFG
DGQAPEHCGHCSVCRGQVATLPSPSELPSLSGRDAKALCAAFVEKHLQYAGHEPSPECLT
RFLCGVTTPLFTKLKARQLAGFAALEDYPYAEVRNWLS
NT seq 1917 nt   +upstreamnt  +downstreamnt
atgtccaccctcaaacgcgtcttcggtttcgataagctgcgccccggccaggaagcggtg
atcagcgccgtgctcgccggtcgttcggcggcggcgatcttccctaccggctcgggcaag
tcgctgtgctaccagctgccggccctgcacctgccgcacctgaccctggtcatctcgccg
ctgctggcgctgatgcaggatcagctcgccttcctgcatgctcacggcattgcagcggcc
agcatcgattcggcgcaaagccgcgagcaggcgatggaggtgatgaatcgtgcgcgcagc
ggcgagctgaagattctgatgatctcggtggaacgcctgaagaacgagcgctttcgcaac
ttcatcgcccaggtgccgatttccctgctggtggtggacgaggcgcactgtatctccgag
tggggccacaacttccgcccggattacctcaagctgcccgactaccagcgccagttcggt
atcgcgcaggtgctgctgctgaccgccacggccacgcctaaggtgatcgccgatatgcgc
gagaaattcgccatcgccgaggcggatgtcgtcaccaccggtttttaccggcccaacctc
aacctgctggtcgagccagtacctggcggcgccaagatgcagcgcctgcagcaatggctg
gcaccgcggcgcggccaggcgagcatcgtctacgtcacccagcagaagaccgccgagcag
gtggccgagcacctggcgcgcgatggtctggcggtcagcgcctaccacgccggtatggcc
catgaggtacgcgagtcgatccagcgccgtttcatggccggtgagctggaatgcattgtc
gccaccatcgccttcggcatgggcatcgacaagcgtgacatccgcaacgtggtgcacttc
gacctacccaagtcggtggagaactacagccaggagataggccgcgccgggcgcgatggt
caggcttcggactgcctggtgctggccagccgcgatggcctcagcgtgctggagaacttc
gtctatggcgatacgccagagctctccggcattcgcgccgtgctcgacgacttgcgtgtg
gtcggcacgggcgggcaatgggagctgatgctcaatcagctgtccgagctgagcaatatc
cgtgcgctgccgctcaagaccctgctggtgcagctggagctgcgcggcatcatcgcgcca
cgctatgcctacttcgccgagtatcgcttcaagctgttgctggacgacgaggccttgctg
ggacagttcgagggcgagcggcgccagttcgtcgaggcgatactggcctgctcgaaacgg
gcgcgcacctggtcgacgctggacttcgacgcactgtatcaacagtacggcgccgagcgc
gcgcgggtggtcaaggcgctggattacttccaggaaaggggttggctggagctggaaagc
aagcagatgaccgaggtctatgccgtgctcgatggcgacttcgatgtcgatgccctggcc
aatgatctgcacgcacattttcgcagccacgaggccagcgagatcgcccgtatccaggcc
atgctcgcgctattcgaaagcaacgagtgcctcagtcgccgtctggcgctgtacttcggt
gacgggcaggcgcccgagcattgtgggcactgttcggtgtgccggggccaggtcgccaca
ttgccttcgccatcggaactgccgtcgctgagcggtcgggatgcgaaggcgctgtgcgcc
gccttcgtcgagaagcacctgcagtacgccggacacgaaccgagccccgagtgcctgacg
cgttttctctgcggcgtgaccacgcccttgttcaccaagctcaaggcacgccagctggcc
ggcttcgctgcgcttgaggattacccctatgccgaagtgcgcaactggctatcgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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