KEGG   Pseudomonas mendocina NK-01: MDS_3914
Entry
MDS_3914          CDS       T01473                                 
Name
(GenBank) transcription elongation factor NusA
  KO
K02600  transcription termination/antitermination protein NusA
Organism
pmk  Pseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:pmk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmk03021]
    MDS_3914
   03009 Ribosome biogenesis [BR:pmk03009]
    MDS_3914
Transcription machinery [BR:pmk03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     MDS_3914
Ribosome biogenesis [BR:pmk03009]
 Prokaryotic type
  rRNA transcription factors
   MDS_3914
SSDB
Motif
Pfam: NusA_N KH_5 HHH_5 S1 KH_2 DUF2187 DUF507
Other DBs
NCBI-ProteinID: AEB59945
Position
complement(4310305..4311786)
AA seq 493 aa
MSKEVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFR
RWTVVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKV
REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVR
LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAV
RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV
DEDAHAMDIAVGEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQS
FIDELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEDIVNELRARAKDRLLTKA
IANEEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQSIDDLLDIDGIDEERA
GKLIMAARAHWFE
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgagcaaagaagtactgctggttgttgagtcggtatccaacgagaagggtgtaccggcc
ggcgtgatttttgaggcgctggagctggctctggcgaccgcgaccaagaaacgtttcgag
gacgaggtcgatctgcgtgtgtcgatcaatcgtcagaacggtagctacgaaaccttccgt
cgctggaccgtggtcgacgagtccgagttcgaagatccggcctatcagctgactgaagac
atgccgcaggccgtcgaagccaaggccaagatcggtgacgtgctcgaagaaaaggtcgag
tccatcgagttcggccgtatcgccgcgcaaaccgccaagcaggtcatcgtgcagaaagtg
cgcgaggccgaacgcgctcaggtggtagacgcttaccgcgagcgcctgggtgagatcatc
tccggcaccgtgaagaaggtcacccgcgacaacgtcatcgtcgacctgggcaacaacgcc
gaggcgctgctggcccgcgaagacatcattccgcgcgagactttccgtgttggcgtgcgt
ctgcgtgccctgctcaaggaaattcgtaccgagaaccgcggcccgcagctgatcctgtcg
cgtaccgcaccggaaatgctgatcgagctgttccgcatcgaagtaccggaaatcgccgaa
gggctgatcgacgtcaaggccgcctcccgtgatccgggttcgcgcgccaagatcgccgtg
cgttccaaggacaaacgcatcgacccccagggcgcctgcatcggcatgcgcggttctcgc
gtccaggccgtttccggcgagctgggtggcgagcgtgtcgatatcgtgctgtgggacgac
aaccccgcgcagttcgtgatcaatgccatgtcgccggctgaagtggctgcgatcatcgtc
gacgaagatgcccatgccatggacatcgccgttggcgaagacaacctggcgcaggccatc
ggccgtggcggccagaacgttcgtctggccagtcagttgaccggttggacgctgaacgtg
atgaccgaagcggacatccaggccaagcagcaggcagaaaccggcgacatcatgcagtcc
ttcatcgacgagctggaagtcgacgaagaactggctcaagtcctggtcgaagagggtttc
accagtctcgaagagattgcctacgtacccatggaagaaatgctcagcatcgatggcttt
gacgaggacatcgtcaatgagctgcgtgcacgggctaaggatcgtctgctgaccaaggcg
atcgccaacgaggagaagttggccgatgcccatccggcggatgatttgctggaactggaa
ggcatggacaaggcgctggctcttgagctcgcgctgcgcggcgtgattacccgtgaagac
ctggccgagcagtcgatcgacgacctgctcgacatcgacggcatcgacgaagagcgtgcc
ggcaagctgatcatggccgctcgagcccactggttcgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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