KEGG   Paenibacillus mucilaginosus 3016: PM3016_205
Entry
PM3016_205        CDS       T01757                                 
Name
(GenBank) Rnr
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pmq  Paenibacillus mucilaginosus 3016
Pathway
pmq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PM3016_205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmq03019]
    PM3016_205
   03016 Transfer RNA biogenesis [BR:pmq03016]
    PM3016_205
Enzymes [BR:pmq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PM3016_205
Messenger RNA biogenesis [BR:pmq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PM3016_205
Transfer RNA biogenesis [BR:pmq03016]
 Prokaryotic type
  tRNA degradation factors
   PM3016_205
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 CSD PqqD HemN_C DUF3438
Other DBs
NCBI-ProteinID: AFC27186
UniProt: H6N8R2
Position
228337..230367
AA seq 676 aa
MITKDILLDFMQEEAYKPLTYQELEQHFQLDSAQAFKDFLKLLNELENEGLIVRTRNDRY
GVPERMNLLRGRLQAHAKGFGFLIPDDKEHPDVYIHANDMSTAMNGDIILVRITSRSPSG
GRMEGEVVRVVSRANTRIVGLFQAHEEYAFVIPDDKRVVRDIFIPKDSFGGAMDGHKVVV
NIVSYPEGRAAAQGEVIEILGHKNDPGVDILSIIRKHGLPEAFPDEVMEEASEAPDVITE
EEIVSQGRRDLRNKRIVTIDGEDAKDLDDAVNVEVLENGNYVLGVHIADVSYYVRENSAL
DQEAYSRGCSVYLVDRVIPMLPHRLSNGICSLNPRVDRLTMSCEMEFDAQANVVRHDVFT
SVIRTSERMTYKNVRNLLKGEAEPEVQEKYAYLMDDFRRMEDLAMRLRNKRMRRGAIDFD
FQESKILVDESGKPTDIVKRERSIAEMIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPD
AEKLQHFLEFITNFGYVVRGKGNTIHPKALQSLLEEIKGTKEETVISTVMLRSMKQAKYD
ANSMGHYGLAAEFYSHFTSPIRRYPDLVIHRVMREVLEGGGTGLTDKRHEYLTSRMDDIA
KQSSERERVAVDAERETEALKKAEFMLDKVGEEFTGIISSVTSFGMFIGWRIRWKVSSVS
RISQTTTTTSMMRSTR
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgatcactaaagacatattacttgattttatgcaggaagaggcttataagccgctgact
taccaggagcttgagcagcattttcaactcgacagtgcccaggcgttcaaggatttcctg
aagctcttgaatgagctggagaacgaagggctgatcgtgcggacacgcaatgaccggtac
ggcgtgccggagcggatgaacctcctccggggccgtctgcaggctcatgccaaagggttc
ggcttcctgattccggacgataaggagcatccggacgtctacattcatgcgaacgatatg
agtacagccatgaacggggacatcatactggtccgcatcacttcccgcagtccttcaggg
ggacggatggaaggggaagtcgtccgggtcgtgtcacgagccaacacccggattgtcggt
ctgttccaggcccatgaggagtatgcgttcgtcataccggacgacaagcgggtggtacgc
gatatcttcatcccgaaggattccttcggcggggctatggacgggcacaaggtggtcgtc
aatatcgtctcctatccggaaggacgggcggcggcacagggagaagtcatcgagattctt
gggcataaaaatgacccaggcgtcgacattctctcgattatccgcaagcatggtcttccg
gaggccttcccggatgaagtgatggaggaggcttcggaagctccggacgtcattacggaa
gaggagattgtgtcccaaggccgccgcgacctccgcaacaagcgaatcgttaccatcgac
ggcgaagacgccaaggacttggacgatgccgtcaatgtggaagtgctcgagaacggcaac
tacgtcctgggcgttcacattgcggacgtcagctattatgttcgcgagaactcggcgctg
gaccaggaggcgtatagccgcggctgctccgtctacttggtggaccgggtcattcccatg
ctgccccaccgtctctcgaacgggatctgctccctgaatccgagagtggaccggctgacg
atgtcctgcgaaatggagttcgatgcacaggcgaacgtggttcggcacgatgtatttacg
agtgtgattcggaccagcgagcggatgacgtacaagaatgtgcgcaatctgctcaaaggg
gaagccgagcctgaagtgcaggaaaagtacgcgtacctcatggacgatttccgccggatg
gaagacctggcgatgcggctgcggaacaagcggatgcgccgcggtgcgatcgattttgac
ttccaggaatccaaaatcctcgtagatgagagcggcaaaccgacggatatcgtgaagcgg
gagcgttccatcgccgagatgatcatcgaagagttcatgcttgcggcgaacgaaacggtg
gcggagcatttccactggctcaaggttccgttcctgtaccggatccatgaagatccggac
gcggagaagctgcagcacttcctcgagttcatcacgaacttcggctatgtggtgcgcggt
aagggtaatacgattcatccgaaggcactgcagagtctcctggaggagatcaaaggaacg
aaggaagagacagtcatctcgacggtcatgctgcgttccatgaaacaggcgaagtacgat
gcgaactcgatgggtcactatggtctggcggccgagttctattcccacttcacatcaccg
atccgccggtatccggatttggtcatccaccgggtcatgcgagaggtactggagggcggc
ggaaccggtcttaccgacaaacggcatgagtatctgacttcaagaatggacgatatcgcc
aagcagtcgtctgaacgcgaacgggtagcggtagatgccgaacgggaaaccgaggctctc
aagaaagccgagttcatgctcgacaaggtcggcgaagagttcaccggcattatctccagc
gtcacctccttcgggatgttcatcggctggagaatacggtggaaggtctcatccgtctct
cggatctcacagacgactactaccacttccatgatgcgcagcacgcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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