KEGG   Proteus mirabilis HI4320: PMI2308
Entry
PMI2308           CDS       T00753                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
pmr  Proteus mirabilis HI4320
Pathway
pmr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pmr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PMI2308 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmr03400]
    PMI2308 (recD)
Enzymes [BR:pmr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     PMI2308 (recD)
DNA repair and recombination proteins [BR:pmr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PMI2308 (recD)
SSDB
Motif
Pfam: AAA_19 RecD_N AAA_30 UvrD_C_2 Helicase_RecD Viral_helicase1 AAA_11 SH3_13 AAA_22 PhoH UvrD-helicase SLFN-g3_helicase UvrD_C AAA_28 nSTAND3 AAA_16 DEAD T2SSE AAA SRP54 CbiA NTPase_1
Other DBs
NCBI-ProteinID: CAR44562
UniProt: B4F2F6
Position
complement(2509816..2511732)
AA seq 638 aa
MIKLLEQAIAQNLLRPLDLRFAQMLVADENPILLFIFAYLSAQTGAGHVCLPLNIIQQDK
LFDGRHTELSQAIWQEMAQPSAKEILAELNQSECVNQGHSDLPSPIILDNGLLYLQRMWR
YEEQIAQFFRQEQRVVDIDENQLTNVLNQLFPSVKTHAETNWQKVAAAVAITSSISIISG
GPGTGKTTTVAKILAAFVMLTANEKPIIQLAAPTGKAAARLTESLGKALAQLALSEEELK
WMPDQAQTIHRLLGAQPESQQVRYHRDNPLQLDILVIDEASMVDLPMMARLIEALPEHCH
VIFLGDKDQLASVEAGAVLGDICRFADQGFSQRRFEQIDRLTQGELQKDPASMTTSTTPV
SVVSDSLCLLRKSYRFGSHSGIGQLAFAVNQGQVKSAMTLLKKATVTQESTEREKHTDPQ
DIEFISLDTDESYMKMLQDVAKAYHHYLSLVAQKAAPETILHSFNQYRLLCALREGPFGV
TGLNERIEMLLHRQRLIRRPINSYQREYIGRPIMIQRNDSTLGLFNGDIGIMLNNDEGEM
KAFFQLPDGTLKAIQPSRLPQHETAYVMTVHKSQGSEFTHTALVLPTQFSPIVSRELLYT
AITRAKQKLSLYSSEYMVKMAIQTRIQRRSGLVEKLRY
NT seq 1917 nt   +upstreamnt  +downstreamnt
atgattaaattattagaacaagcaattgcacaaaacctattgcgcccgttagatttacgt
tttgctcaaatgctggtggcagatgaaaatcctatcctactgtttatttttgcctatctc
agtgctcaaacaggggcgggccatgtttgcttaccgttaaatatcatacaacaagataaa
ttgtttgatgggcgacacaccgagctttcacaagccatttggcaggaaatggcgcaacca
tcagcgaaagaaatactggcagagcttaatcagagcgagtgtgttaatcaaggccatagt
gacttaccttcacctattattctcgataacggattactttatctacaaagaatgtggcgt
tatgaagagcaaattgcgcaattttttcgccaagagcaacgggtggttgatatcgatgaa
aatcaattaacaaacgtattaaatcaacttttcccaagcgttaaaacacatgctgaaact
aactggcaaaaagtcgccgcagcggttgctattacaagctctatttcgattatttcgggt
ggcccaggaacagggaaaaccacgacagtagcaaagattttagctgcttttgtcatgcta
acggcgaatgaaaaacccattattcaactagccgcacccacgggaaaagcggcagctaga
ttgaccgaatcattaggtaaagcattagcgcaattggcactaagtgaagaagagttaaaa
tggatgcccgatcaagcgcaaaccattcatcgcttattaggtgcccaaccggaaagtcag
caagttcgttatcatcgcgataatccgctacaacttgatatcttggttatagatgaagct
tctatggtggatttaccgatgatggcgcgtttaattgaggccttaccggaacattgccat
gttatttttctgggagataaagatcagctcgcttcggtagaggcaggagccgttttaggg
gatatttgtcgttttgcggatcaggggtttagccaacgccgttttgagcagattgatcgc
ttaacacaaggtgaattacagaaagatcccgcttctatgacgacttctactacgccagtt
tcggtggtcagtgattcactatgtttactgcgtaaaagttatcgttttggctcacattca
ggtattggtcaattagcttttgcggttaatcaaggacaagtgaagagtgctatgacgtta
ctgaaaaaagcgacagtaacacaagagagcactgagcgagaaaaacataccgatccgcag
gacatcgaatttatctcattagacaccgatgagagctatatgaagatgcttcaagatgtt
gctaaggcttatcatcactatctatcgttagtcgcgcaaaaagcagcaccagagactatt
cttcatagctttaatcaatatcgtttattgtgcgctttgcgagaagggccttttggtgtc
acaggactaaatgaacgtattgagatgctgttacatcgccaacgcttgatacgacgacct
ataaatagttatcagcgggagtatattggacgaccaattatgatccagcgtaatgacagc
acattggggctatttaatggtgatatcggcattatgcttaataacgatgaaggagaaatg
aaagctttctttcagttgcctgatggcacattgaaagctatccaacctagtcgtttaccg
caacatgagactgcttatgtgatgacagtacataaatcacaaggttcggaatttacccat
acggcactggtgttgccaacacaattttctcctattgttagccgagaattactctatacg
gcgataacgcgagccaagcagaagctatcactttattcttctgaatatatggtgaaaatg
gcgatccagacacgtattcaacgccgcagtggattagttgaaaaactgcgttactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (39)   

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