KEGG   Prunus mume (Japanese apricot): 103322043
Entry
103322043         CDS       T03196                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103322043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmum03041]
    103322043
Enzymes [BR:pmum01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103322043
Spliceosome [BR:pmum03041]
 Complex C
  Other components
   Step II factors
    103322043
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 SLFN-g3_helicase AAA_19 AAA_30 AAA_24 Flavi_DEAD nSTAND3 T2SSE Microtub_bd AAA_33 ATPase AAA_16 SRP54 Sigma54_activ_2 ABC_tran
Other DBs
NCBI-GeneID: 103322043
NCBI-ProteinID: XP_008222129
Position
LG2:20581783..20591591
AA seq 1302 aa
MEGRANAEPIDLDKTTVTLEPEVNNAGGLFVPGKDRVVFRPPERKSLLGLDVLAIAKREG
SKVDGGFKTPRERVVSVVSSIEEEEQSESVNTDDKGSDACPAIQSHSRRRYREISGSETP
RTESTVTEEGQVDYMYGTRYSREHVRADVLATPSGSSHSVRSRTPKYDRDDRGSERRDDN
GRYEREDRGSERRDYQDGNRSERQRYGNGKDYYRRREGGRYEQEYGGEYGRKQRRYEDSK
RTPGRSDWDDGRWEWEESPRRDSYSNTSRRHQPSPSPMLLGASPDARLVSPWLGGYTPHS
SGSAASPWDHISPSPAPIRASGYSVKSSSSKHGARSHELTFSSESSQSFEDGEADNTDSA
EEHKYEISESMRIEMEYNSDRAWYDREEGNTMFDTTDDSSLFYGNDASYQKKEAELAKRL
VRKDGTKMSLAQSKKLSQRTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVILLVHD
TKPPFLDGRVVYTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQSMNKSRQRFWELA
GSKLGDILGVEKSAEQIDADTAAVGEDGEIDFKEDAKFAQHMKSGEAVSDFALSKTLSQQ
RQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTVNGIVGCTQPRRV
AAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPKTVIKYMTDGVLLRETLRDSDLDKYRV
VVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRT
FPVNILYSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQLI
SSSKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDT
GYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYLNEMLPSPV
PEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLG
WKMVEFPLDPPLAKMLLMGEELGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFSI
PESDHLTLYNVYQQWKQHQYRGDWCGDHFLHVKGLRKAREVRSQLLEILKTLKVPLTSCW
PDTDNVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGMGCTPDYLVYHELI
LTAKEYMQCATAVEPQWLAELGPMFFSVKDSDTSMLEHKKRQKEEKTAMEEEMENLRKTQ
AEEEKENKRKEKEKRSKQQQQVSTPGLHKGSSTYLRPKKLGL
NT seq 3909 nt   +upstreamnt  +downstreamnt
atggagggacgagcaaatgctgaacctattgacctggacaaaacaacagtgacgttggaa
cctgaggtgaacaacgctgggggattatttgttcctgggaaggatagggtcgtttttaga
cctccagagaggaaatctctcttagggttagatgtgcttgctattgcaaaacgggaagga
tctaaggttgatggtggattcaagaccccaagagaaagagttgtatctgttgtctcatca
atagaggaagaggaacaatcagagtctgtaaatacagatgacaaagggagtgatgcatgc
cctgctatacaaagtcactctaggaggcgatatcgtgaaatatctgggagtgagacaccg
cgtacagaaagtactgtaacagaggaaggacaagttgattatatgtacgggactcgttac
tctagggaacatgtgagggcagatgttttggccacacctagtggaagttcacacagtgtt
aggtctcggactcctaagtatgacagggatgatcgtggtagtgagagaagagatgacaat
ggtaggtatgaaagggaggaccgtggtagcgagagaagagattaccaagatggtaatagg
agtgagagacaaagatatggtaatggtaaggattattatcgtcgaagggaaggtggccga
tatgagcaagaatatggtggagaatatggaagaaagcagcgtagatatgaagattcaaag
aggacacctggcagatctgactgggatgacgggagatgggaatgggaggagtcaccacga
cgtgacagctactctaataccagtaggcgccatcaaccgtcaccatcacctatgctactt
ggggcctcacctgatgcacgactagtttccccatggttgggtggctacacacctcattct
tctggttctgctgcttctccctgggatcacatctctccctctccagccccaatacgtgct
tctggatactcagtcaaatcttcaagttcgaaacatggtgcgaggtcccatgaacttact
ttttcttcagaaagttcacaatcatttgaggatggagaagcagataacactgattcggct
gaggaacacaaatatgagattagtgaaagcatgcgtatagagatggaatacaattctgac
cgtgcatggtacgatagagaagaaggaaacacaatgtttgatacgactgatgactcatcc
ttattttatggaaatgatgcttcatatcaaaagaaggaagcagagttggcgaaaaggctg
gttcgaaaagatggaactaagatgtctcttgctcagagcaaaaagttgtctcaacgcact
gctgataatgctcagtgggaggatcgtcaacttttgagatctggtgctgttagaggtacc
gaggtgcagactgagtttgacgatgaagaagagcggaaagttattcttcttgtacatgac
acaaagcctcctttcctggacggcagggttgtttatactaagcaagcagagcccataatg
cctataaaggatcccacatcagatatggccataatttcacgcaaagggtctactctggtt
agggaaatccatgagaagcaaagtatgaacaagtcacgtcagcgtttctgggagcttgca
ggttccaaacttggtgatattcttggtgttgagaaatcggcagagcagattgacgcagat
actgctgcagtaggtgaagatggtgaaattgatttcaaagaagatgccaagtttgcacaa
catatgaagagtggggaggctgtgagtgattttgcattgtcaaaaacactctcacagcaa
cgacaatatttgcccatattttctgtgcgggatgagttattgcaggtgattcgagaaaac
caggttattgttgttgttggagaaactggttctggaaagacaactcaactgacacagtat
cttcacgaagatgggtacacagtaaacggtatagtgggttgcacccaaccaaggcgtgtg
gcagccatgagtgttgcaaaaagagttagtgaagagatggagacggagcttggtgataaa
gttggctatgctattcgttttgaggatgtgactgggccaaaaaccgtaataaagtacatg
actgatggagtacttctgcgtgaaacgcttagagattctgaccttgacaagtaccgtgtt
gttgtgatggacgaagcccatgaaaggtcactcaacacggatgtgctgtttgggattttg
aaaaaagtggtggcccaacgtcgtgattttaagctcattgtgacatctgcaactctaaat
gctcagaaattttcaaatttctttggaagtgtaccaatttttcacattcctgggagaaca
tttcctgttaatatcttgtacagcaaaaccccgtgcgaagattatgttgaaggtgcagtg
aagcaggccatgactattcacatcaccagccctccaggtgacattctcatcttcatgaca
ggccaagatgagattgaggcagcctgttatgcacttgctgagcgtatggaacaacttatt
tcatcctccaagaaaggggtgccaaaactcttgatactccccatatattctcagttacct
gctgacttgcaagcaaagatattccaaaaagctgaggatggtgctcgcaagtgcattgta
gcaaccaacattgctgagacttcgttgaccgtggatggaatattttacgttattgacact
gggtatggtaaaatgaaagtatacaaccctcgaatgggtatggatgctcttcaagtgttt
cctgttagtcgtgctgctgcggatcagcgtgctgggcgtgctggtagaactgggcctgga
acatgctatcggttgtacacagagaatgcatatctaaatgaaatgctgcccagtcctgtg
ccagagattcagaggactaaccttggtaatgtggtgttgttgctcaagagtcttaaggtc
gagaacctgctagatttcgatttcatggacccacctccccaggacaacattctcaattct
atgtaccagctgtgggtcttaggcgctcttaacaatgttgggggcttaactgatctgggc
tggaaaatggtggagttcccattggatcccccacttgctaagatgctattgatgggggaa
gagctaggatgcttggatgaggttttgacaattgtgtccatgctttcggtgccgtccgta
ttctttaggcctaaggatagggcagaagagagtgatgctgcacgtgagaaattctccatt
ccagaatccgaccacttgacactgtataatgtctaccagcagtggaaacaacatcagtat
cgtggggattggtgcggtgatcattttttgcatgttaaagggttacgaaaggctagagag
gtgaggtcccagctgctagagatcctgaagacactgaaagtccctttaacatcctgctgg
cctgatacagataatgtgagaaaagctatttgctctgcgtactttcacaattctgcaaga
ttgaagggagtcggggagtatgtgaattgccggaccgggatgccttgccatttacatccg
agcagtgctctttatggtatggggtgcactccggattatctcgtttatcatgaattaatt
ttgacggcaaaggagtacatgcagtgtgccacagcagtggaaccacagtggttggctgag
ttggggcctatgttcttctctgtaaaggattcggatacttcaatgttggagcacaagaag
agacaaaaggaggaaaaaacagccatggaggaggaaatggagaacctgaggaagactcaa
gcagaggaggagaaagaaaacaaacggaaggagaaggaaaagagatccaagcagcagcag
caagtctcgacgccgggtttgcacaagggctcttccacatatttgaggccaaagaaactt
ggcttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (20)   
   Pfam (20)   
All databases (36)   

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