KEGG   Prunus mume (Japanese apricot): 103327345
Entry
103327345         CDS       T03196                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103327345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmum03041]
    103327345
Enzymes [BR:pmum01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103327345
Spliceosome [BR:pmum03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    103327345
 Complex B
    103327345
 Complex C
   U2 SnRNP specific factors
    103327345
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 103327345
NCBI-ProteinID: XP_008227876
Position
LG4:complement(727069..731922)
AA seq 787 aa
MSKRKFGFEGFGINKQSTFNFERSQQAPQRLYVPPSSRGQSHDNYEDTDLDNIDYDDNDG
SRDPGNNNNHDEGGGGGGDENDEIDPLDAFMESIHEEVRSAPPPKPKEKAEKYKDDEEDD
PMESFLRAKKDVTLTLASDALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVLDKRKIE
PIAALDHSSIDYEPFNKDFYEEKESISGMSEEDVAEYKKSLAIRASGFDVPRPLKTFEEC
GFSSQLMSAIKKQDYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ
PELQKEEGPIGVICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE
IVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS
ATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDE
GDVLVFASKKAAVDEIESQLSQKGFKVTALHGDKDQASRMDILQKFKSGIYHVLIATDVA
ARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSL
VAAGQNASTELMDLAMKDGRFRSKRDSRKGGGKKGRGRGGGGGGGGGGGGGRGVRGVDYG
LGIGYNSESNNSSSHTPTSRSAAVTSLRTGMMSQFKTKFVAAASNSPSQGSGNSSSVPQR
SALRGFVSGGSIGGDIYRTQATNTVTPAPTSVVNISSQNSGENASQKPSESSRDKPRERR
RRSGWDC
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgtcgaagagaaaattcggattcgaaggctttggcataaacaagcaatcgactttcaac
ttcgagcggtcccagcaagcacctcagcgactctacgtgcctccgtcgtcgcgcggacaa
agccacgataactacgaagacaccgaccttgacaacattgattacgacgataacgatggt
tccagggaccctggaaataacaacaatcacgacgaaggtggcggtggcggcggcgacgaa
aatgatgaaattgaccctcttgacgcgttcatggagagcattcacgaggaggtgaggtcg
gcgccgccgccgaagccgaaagagaaggctgagaagtacaaggacgatgaggaagatgat
cctatggagagctttttgagggccaagaaggacgtgacgctgacgctggcttccgatgcg
ttacacgctggatacgactccgacgaggaggtctatgcggctgcgaaggcggtcgatgcg
gggatgttggagtacgattcggatgataatcccattgttctggacaagaggaaaattgag
ccaattgccgctctcgatcatagttcgatcgactacgagccctttaataaggatttttac
gaggagaaagagtcaatttcagggatgagtgaggaggatgttgctgagtacaagaagagc
ttggccatccgtgcgtcgggttttgatgtacccaggccacttaagacatttgaagaatgt
ggattttcttcacagctcatgagtgcaataaagaaacaagattatgaaaagcctacacct
atacagtgccaagctctacccatagttctttctgggagagatatcatcggtattgcaaaa
actggttctggaaagactgccgcctttgtccttcctatgatagtccacattatggatcag
ccggaacttcagaaagaagagggtcctattggagtgatatgtgcacctactagagaactg
gcgcaccaaatatacttagaggccaagaaatttgctaaatcacatgggatacgtgtctct
gctgtatacggtggaatgtctaagcttgatcaattcaaagaacttaaggcaggatgtgag
atagttgttgctactcctgggagattgatagacatgcttaaaatgaaggcactgacgatg
ctaagggcaacttacctagtacttgatgaggctgatcggatgtttgaccttgggtttgag
cctcaaattaggtctattgttggtcagattcggccagaccggcagacattgctcttttct
gcgacaatgccccgtaaagttgaaaagttggccagggagattctctctgatccaataaga
gttacagtgggtgaggtgggaatggccaatgaggatatcactcaggttgttcatgtaatt
ccttctgatgctgagaagttgccctggcttcttgagaagttacctggaatgatcgatgag
ggtgatgttttagtatttgcttcaaaaaaagctgcagtggatgagattgaatcacagctt
tcccagaaaggttttaaggtcacagctctgcatggtgacaaggaccaggcatctcggatg
gatattttgcaaaaatttaaatctggcatttaccatgttcttattgcaactgatgttgct
gctcgtggtcttgacatcaagtcaattaagtcagttgtgaactttgatattgcaaaagac
atggacatgcacgtccatcgaattggtagaacaggtcgtgctggtgataaagatgggact
gcatacactcttataactcagaaagaggcacggtttgctggtgaattggttaatagcttg
gttgctgctggtcagaatgcctccacagagctcatggacctagcaatgaaggatggcaga
ttcaggtctaaacgtgattcaagaaaaggaggtggaaagaagggtagagggaggggcggt
ggtggtggtggtggcggcggcggcggcggaggtcgaggtgtgcgtggggtggattatggt
ctgggtattggatataattcggaatccaataattcttcatctcatactcctactagtcga
tctgctgcagtaacttctctgaggacaggaatgatgtctcagttcaagaccaagtttgtt
gctgctgcatcaaactctccaagtcagggttcaggtaacagctctagtgttccccagaga
tcagcattaagaggatttgtatcgggtggctccattggcggggacatatatagaactcag
gcaacaaatacagttactcctgctccgacatcagtcgtaaacatatcttcacagaactct
ggagaaaatgcaagtcagaagccttctgaaagttctagagataaacctagagaacgtcgg
aggcgctctggttgggactgttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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