KEGG   Prunus mume (Japanese apricot): 103334456
Entry
103334456         CDS       T03196                                 
Name
(RefSeq) ABC transporter I family member 21
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103334456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103334456
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103334456
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_29 nSTAND3 NACHT AAA_28 AAA AAA_18 AAA_15 AAA_23 SMC_N PduV-EutP AAA_22 Zeta_toxin AAA_5 SRP54 AAA_25 AAA_33 AAA_30 Arf AAA_24 AAA_16 AAA_14 AAA_7 ATP-synt_ab
Other DBs
NCBI-GeneID: 103334456
NCBI-ProteinID: XP_008235651
Position
LG6:complement(3737638..3740340)
AA seq 301 aa
MAGRVSETSNPRAEGEGETSSGIRVHGMQFSYDAQPPLFCDFNLNIAPGSRCLLVGANGS
GKTTLLKILAGKQMVGGRDVVRVLNCSAFHDTHLVCSGDLAYLGGSWSKSVGSAGELPLQ
GDFSAEHMIFGVEGTDPVRRDKLIELLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLL
LDEVTVDLDVVARLDLLDFFKEECEQRGATIVYATHIFDGLETWATHLAYIQDGELKRAE
KLSEVNELKSSANLLSVVESWLRAETKHEKKRSTNPPAQTQKTSPFATSPFMSSRHMAYY
R
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcgggcagggtcagtgaaacatccaatccgagagcggaaggagaaggagagacgtcg
agcggtattagagtccatggcatgcaattctcgtacgatgcacaacctccgcttttctgc
gatttcaaccttaacatagcccccggatcgcgatgccttctcgtcggcgccaacggatct
ggcaagaccactttgctgaagattctagcagggaagcagatggtgggagggagagatgtg
gtgcgggttttaaattgttcggcttttcatgacactcatttggtttgcagcggcgattta
gcttacttgggaggctcgtggagtaaatctgttggctctgctggagaacttccattgcag
ggagatttctcagctgaacatatgatatttggagttgaagggactgatccagttaggaga
gacaagttgattgagctacttgatataaacctccagtggagaatgcataaagtatctgat
gggcaacgacgtcgagtccaaatctgcatggggcttcttcatcctttcaaggttctcttg
cttgatgaggtaacggtcgacttggatgttgttgccagactggacttattagatttcttc
aaggaagaatgtgaacagagaggagcgacaattgtttatgcaacccatatttttgatggg
ttggagacatgggcaacccatctggcttacatccaagatggtgagctaaagagggctgag
aagttatcggaggtcaatgagttgaagagttcggccaatctgctctctgttgttgagtcc
tggctccgtgctgaaaccaagcatgagaaaaagagatccacaaatcctcctgcccaaact
caaaagacctctccttttgctacatctccatttatgtcatcaagacacatggcatattac
cgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (25)   
   Pfam (25)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system