KEGG   Polynucleobacter necessarius: Pnec_0043
Entry
Pnec_0043         CDS       T00683                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pne  Polynucleobacter necessarius
Pathway
pne03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Pnec_0043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pne03021]
    Pnec_0043
   03400 DNA repair and recombination proteins [BR:pne03400]
    Pnec_0043
Enzymes [BR:pne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Pnec_0043
Transcription machinery [BR:pne03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Pnec_0043
DNA repair and recombination proteins [BR:pne03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Pnec_0043
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Peptidase_M23 Biotin_lipoyl_2 Baculo_ME53
Other DBs
NCBI-ProteinID: ACB43371
UniProt: B1XSP4
Position
48594..52856
AA seq 1420 aa
MKALLDLFKQTQGDEQFDVIKIGLASPEKIRSWSFGEVRKPEAINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGIICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPEGAMKRGQIMSEDEYIAKTEEYGDGVF
TAIMGAEGIRDLLRSIDIDREVETIRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVVRA
YEAGQVELASRVAVRITEYEIVDKKAEGDARFAGKTKIYQTSVGRAILSEILPKGMSFEE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATNAGISVAIDDMLIPTSKE
RIITEASTKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEEDCGATTGVTMKALVEGGEI
IEALRDRILGRVCIGDIVHPDTQEVIVPNDTLLDEDHVDQIVALGIDEVKVRTVLSCLTR
FGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGALKFSGTMRVVKNSRGEQIVISRSGEALIVDENGRERERHKVPYGATLLLKEDAA
VKAGASLATWDPLTRPIISEYAGIARFDNVEEGVTVAKQVDEITGLSTLVVIDGKRRSAA
SKGVRPVINLIDDKGNDVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGEANEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLKGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQVTDPGDTSFITGEQVERSKLYDENDRVIAEGKHPAQFDNVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLSYRRARKV
REQFERDRAQMIAAEEEAMANMPVEIEAEVVALTGEADPS
NT seq 4263 nt   +upstreamnt  +downstreamnt
atgaaagcattgctcgatttatttaagcaaacgcagggtgatgagcagtttgatgttatc
aagattggcctcgcatctcctgagaaaattcgctcatggtcttttggtgaagtacgcaaa
ccagaagctatcaactaccggacttttaagcccgagcgtgatggtttgttctgcgccaag
atttttggaccaaccaaagactacgagtgcttatgcggtaagtacaagcgcttaaagttc
cgtggcattatctgtgagaagtgcggtgttgaagtaactctcgctaaggtacgtcgtgag
cgcatgggccacattgagttggcagcccctgtagcgcacatctggttcttgaagtccttg
ccatcccgtttgggcatggttctcgatatgacattgcgtgatatcgagcgcgttctttac
tttgaggcatatgtagttgttgatcctggtatgactcctgaaggcgcaatgaagcgtggt
cagatcatgtctgaagatgaatacattgcaaagactgaagagtatggtgacggcgtattt
actgcaatcatgggcgcagaaggtattcgcgatctcttgcgttcgattgatatcgatcgt
gaagtagagactattcgtgctgatttgaaagccactggtagcgatgccaagatcaagaaa
tacgctaagcgcttaaaggtgctcgaggcgttccagacttcaggtattaagcctgactgg
atgattatggaggtgttgccagtattgccaccagagttgcgcccattggtgccattggat
ggcggtcgctttgctacctccgatttgaacgacctctaccgtcgtgtgattaaccgtaat
aaccgcttgaagcgtttgttagagttgcgtgcaccagagattatcgttcgtaacgaaaaa
cgtatgttgcaagaagcggttgactcattgctcgataacggtcgtcgcggtaaggctatg
actggcgctaacaagcgtcctctcaagtccttggctgagatgattaaaggtaagagcggt
cgtttccgtcaaaacttgttgggtaaacgcgttgactactctggtcgttcggtcatcgtg
gttggtcctacattgaaattacatcagtgcggcttaccaaaattgatggccttggaattg
ttcaagccattcatcttcaacaagctggaaactttaggaattgcaaccaccattaaggct
gcgaagaaagaagttgaaagccagactccaatcgtttgggacattcttgaagaagtgatt
cgtgagcatccaatcatgttgaaccgtgcgcctacattgcatcgtcttggtattcaggct
tttgagccaatgctgattgaaggtaaagcaatccaattgcacccattagtctgcgcggca
tttaacgctgactttgacggtgaccaaatggcggttcacgttcctttgtcgctcgaggcg
caaatggaagcgcgtacattgatgttggcttcgaacaacgtattgttcccagctaacggc
gaaccatccatcgttccttcgcaggacgtggtgttgggtctgtattacgctacacgtgac
aagatcaatggcaagggcgaaggcatggttttcgccaacattactgaagtagtgcgtgca
tacgaagcaggtcaagttgaattggcttctcgtgttgctgtgcgtattactgagtatgag
atcgtggacaaaaaagcagaaggcgatgcgcgttttgctgggaagaccaagatctatcaa
acatcagttggccgtgcgatcttgtctgagattttgcctaaaggcatgtctttcgaggaa
attaacaagcctttgaagaaaaaagaaatctcacgcttaatcaacacatcattccgtaag
tgcggtttgcgtgaaacagtgatttttgctgaccgcctcttgcagtctggtttccgtttg
gctaccaatgctggtatctctgttgcgatcgacgatatgctgatcccaacatctaaagag
cgcatcatcactgaagcttctaccaaggttaaagagtatgacaagcagttcatgtcaggt
ctcgtaaccaatcaagaacgttataacaacgtggttgatatttggggtgccgcaggtgac
caagttggcaaggcgatgatggatgagttgtcacacgttgacgtactcgaccgtaacggc
aagactgttcgtcaagaatcctttaactccatctacatgatggcggattctggtgcgcgt
ggatctgcagcgcagattcgtcagttggctggtatgcgtggcttgatggctaagcctgac
ggctcgatcattgaaaccccaattactgcgaacttccgtgaaggcttgaacgtgttgcag
tacttcatctcaacccacggtgctcgtaaaggtctagctgatacagcattgaagacagcg
aactctggttatttgacacgtcgtttgtgcgacgtaactcaagatctcgtggtgatcgaa
gaggattgtggtgcgactactggcgttacgatgaaggcgttggttgaaggcggcgaaatt
atcgaagcattgcgtgaccgtattttgggtcgtgtatgtatcggtgacatcgttcatcct
gacacacaagaagtcattgttcctaacgacacgttgcttgatgaagatcatgttgatcaa
atcgttgcattgggtatcgacgaagttaaagttcgcacagtattgtcttgcttaacacgc
ttcggcttgtgcgctaagtgctacggacgtgatctaggccgtggtggtttggttaacgtt
ggtgaggcagttggtgttatcgctgctcagtccatcggtgagccaggcacacagttgact
atgcgtaccttccacattggtggcgcagcgtcacgtgctttagttgcaagcaatattgaa
gccaaatcaaatggcgcattgaagttctctggcacgatgcgtgttgtgaagaactcgagg
ggtgagcagatcgtgatttcacgttctggtgaagccttgatcgttgatgaaaacggccgt
gagcgcgagcgtcataaagtaccttatggtgcaactctcttgttgaaagaagatgcggcg
gttaaggctggcgcaagcttggcaacctgggatccattaacacgcccgattatttctgag
tatgctggtatcgctcgcttcgacaacgttgaagaaggcgtaaccgttgctaagcaggtt
gacgaaattactggcctttccactttggtggtaattgatggtaagcgtcgctctgcagca
agcaaaggcgttcgcccagtgatcaatttgattgatgacaagggtaacgatgtgatgatc
gctggtactgatcacccggtaaacattggcctccaagtgggcgctttgattactgttaag
gatggtcagaaggtcgaagttggtgaagtattggcgcgtattccaatcgaatcacagaag
acacgcgacattaccggtggtttgccacgcgttgcagaattgttcgaagcacgttcacca
aaagacgcagctgtattggcgaaagtaactggaactgtttccttcggtaaagaaactaaa
ggtaaacaacgtttggtcattaccgatatggatggtgaagccaatgaattcttgattcca
aaagagaagcaagtactcgttcatgacggtcaggttgtgaacaaaggcgagatgattgtg
gaaggccctgccgatccacatgatatcttgactctcaaaggcatcgaagagctggcaatc
tacatcgttgatgaagttcaagacgtatatcgtctccagggcgtgaagatcaatgacaag
cacattgaagtcatcgtgcgtcaaatgttgcgtcgtgtacaggtaactgatccaggcgac
acatcctttatcactggtgagcaagttgagcgctctaaactctatgacgagaatgatcgc
gtcatagctgaaggcaagcacccagctcagtttgacaacgtattacttggtattactaag
gcatccttgtcgaccgacagcttcatttcagcggcctctttccaagaaaccacccgtgta
ttaaccgaagccgcaattatgggcaagaccgatacactccgtggtctcaaggaaaacgtc
attattggtcgcctgattcctgctggtactggcctgtcttatcgccgtgcccgcaaggtc
agggagcaattcgagcgtgaccgtgctcaaatgattgccgccgaagaggaggcgatggcc
aatatgcctgtagaaatcgaggctgaagtcgttgctcttactggggaggctgatccaagc
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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