KEGG   Pseudoalteromonas nigrifaciens: PNIG_a2456
Entry
PNIG_a2456        CDS       T05271                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
png  Pseudoalteromonas nigrifaciens
Pathway
png03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:png00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PNIG_a2456 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:png03400]
    PNIG_a2456 (mfd)
Enzymes [BR:png01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PNIG_a2456 (mfd)
DNA repair and recombination proteins [BR:png03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      PNIG_a2456 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C Glyco_tran_WecG RecG_dom3_C
Other DBs
NCBI-ProteinID: ASM54471
UniProt: A0A379H9N1
Position
I:2196295..2199768
AA seq 1157 aa
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETE
LEYLLPDNPVMIFPDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIVPVSTLMLRT
APASFIYGSTINFKVGDKLDTHNFRNNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNEADIERFRIAYREKFGA
SAQQDSVYMQVSKGNWPAGIEYYMPLFFEQLATIFDYLPETTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLEPSALYQPINELFANLGNYSRIRLSQAKLGTKAGNKNLTVSEL
PVIRIDHKQSEPYGAFINYVAAQKKHKGRILLSVESDGRRESLLGVLKPSGLKFKEFTSF
EQFTKSQSDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYQASQDALI
RNLAELKEGQPIVHLDHGVGRYQGLQTIDAAGIITEFVTITYASEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWDKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDAPAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAILVPTTLLAQQHFENFKDRFADFPIEVGVLSRFNSPKEQKDTLEKMANGKLDIVIGTH
KLIQADIIFNDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGGQVYFLHNNVETIERVAQEISE
WVPEANVTSAHGQMREQELEQIMADFYHQKYNVLVCTTIIETGIDIPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVKALREGKEPTLENLLQKQTEVDLKLPAL
LPDDYIYDVNARLGMYKRVASCANVADMDELQVELIDRFGLLPDAAKNLFSLQQLKMRAS
DLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPRVYKMDGANKLRFVISEANARER
LKMVTAMLADFEKKVSH
NT seq 3474 nt   +upstreamnt  +downstreamnt
atggcgtttgagcaatgggcagccttgccttgggtgaaatctcaaaaagataaaattcaa
tgggggcaacttagcggcagcggtttaagcattgctattgctgagggtgtaaaacaacaa
gacaatttagtattaattgtaaccccagacacgccaagcgccctgcgccttgaaaccgag
ctagaatatttattgcccgacaacccggtaatgatatttcctgactgggaaaccctacct
tacgaccatttttctcctcatcaagatattatttctgcccgtttagccactttaaatacg
ctcaaaaacgagcaacaaagtgttttaattgtccctgtttctaccttaatgctgcgcacc
gccccggcttcgtttatttatgggtccacaattaactttaaggtgggtgataagctcgat
actcataatttcagaaataatttagaacaagcgggttatttaaacgtacagcaagtaatg
gagcacggcgagtacgccattcgcggctctattgtcgacttataccctatgggcagcccg
catccttttagactcgacttttttgacgacgagctcgacagcattcgtttatttgatgtt
gaaacccagcgctcagatgaaaaagtagataaaattgaactgctcccggcacacgaattt
cccactaacgaagccgacattgaacgctttagaatagcgtaccgtgagaagtttggtgcc
agcgcgcagcaagactctgtttacatgcaagtgagtaaaggtaattggcctgccggtata
gaatattatatgccactgtttttcgagcaactggccactatttttgattacctacctgaa
accacaacggtaatgcagctcggtgatttagaacatgccgccgataatttttggcatgac
gtaaacgtgcgctatgaaaaccgccgcgtagacccactgcgtccattattagagccaagc
gcgctgtatcaacccattaatgaattgtttgctaatttagggaattattcgcgtattcgc
ttatctcaagcaaagctaggtacaaaagcaggcaataaaaatttaactgttagtgaatta
cctgttattcgcattgatcataaacaaagcgaaccttacggtgcgtttataaactatgta
gcggcgcaaaaaaagcacaaaggccgtattttactaagcgtagagtcggatggccggcgc
gagtcattactgggagtattaaaacctagcggcttaaagtttaaagaatttactagtttt
gagcagtttacaaaaagccaaagcgatgttggcctaattgttagcccactggagcaaagt
gttgtattaggtactaaacctagtttatctattatcaccgaacaagaactgcttggcata
aaagtatcgcagcgccgtcgccgtaagcataaataccaagccagccaagatgcactaatt
cgtaacttagccgaacttaaagaaggccaacctattgtacatcttgatcacggcgttggt
cgctatcaaggtttgcaaaccatagatgccgcaggcattatcactgaatttgttaccatt
acttacgccagtgaagcaaaattgtatgtaccggtttcggcgctgcatatgctaagtcgt
tattcgggcggcgaagaagccagtgcaccactgcataaacttggctcagatgcatgggac
aaagctaaaaaacgtgctgctgaaaaagtgcgcgatgtagccgctgagttacttgatatt
tacgctcagcgccaagcaaaaccagggaataaatttaccctcgatgccccagcttatcgc
caatttagcgacagcttcccgtttgaagaaaccgacgatcaacgcaatgccattgaagcc
gtattaggcgatatgcaatcaaaacaagccatggaccgtttagtgtgtggcgatgtaggc
tttggtaaaaccgaagtcgccatgcgcgccgcatttgtagctgttaacgataacaaacaa
gtagctattttggtgcctacaacattacttgcccaacaacactttgaaaactttaaagac
cgttttgccgactttcctattgaggtaggtgtactgtcgcgttttaactcacctaaagag
caaaaagacacgcttgaaaaaatggccaacggcaagctcgatattgtcattggtactcat
aaactgatccaggctgatattatatttaacgatttaggcttattaattgttgatgaagaa
catcgctttggggtgcgccaaaaggagaagattaaagcgctacgcgccgatgtcgacata
ctcactttaactgcaacgcctatcccgcgtaccttaaatatggccatgagcggtatgcgc
gacttatctattattgccactccacctgcaaagcgtttagcagtaaaaacctttgtgcgc
caacgcgatgtagaattaatacgtgaagcggtacttagagaaattaaacgcggtggccaa
gtttactttttacataataacgtagagacaattgagcgcgtagcacaagaaataagtgaa
tgggtgcccgaggcaaacgtaaccagtgcacatgggcaaatgcgcgagcaagagcttgag
caaataatggctgacttttaccaccaaaaatacaacgtattagtgtgtaccactataata
gaaaccggtattgacataccaactgctaacaccataattatggatagagccgacaaacta
ggtttagcgcagttacatcaattacgtggacgtgttggtcgcagccatcaccaagcttat
gcctacttattaacaggcgatcctaaagctctttctaaagatgcaagcaaacgcttacaa
gcaatagagtcattagaagacttaggcgcaggttttgcactagcaacccacgatttagaa
attcgtggtgcgggtgaacttttaggtgatgatcaatcaggacaaatgcaaaccattggc
tttagcttatacatggaaatgcttgaacaagcagtaaaagcattgcgagaaggcaaagag
cccacccttgaaaacctcttgcaaaaacaaactgaggtagacttaaagctaccggcttta
ttacccgatgattatatttacgatgtgaacgcacgtttaggtatgtacaagcgcgttgct
agttgtgctaatgttgccgatatggacgaattgcaggtagaattaatcgaccgctttggc
ttattacccgacgcggctaaaaacctctttagcctgcagcaattaaaaatgcgagcaagt
gatttaggtataacaaaaattgaggcaaacccgaaaggtggttactttgaatttagccaa
aacactaaggttaatcctagcttcatcataggcttgatacaaagtgcaccgcgcgtgtac
aaaatggatggcgcaaataaactgcgctttgttattagcgaggcaaatgcccgcgaacgc
ttgaaaatggtcactgcaatgcttgcagatttcgaaaaaaaggttagccattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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