KEGG   Parastagonospora nodorum: SNOG_14345
Entry
SNOG_14345        CDS       T01161                                 
Name
(RefSeq) hypothetical protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
pno  Parastagonospora nodorum
Pathway
pno03022  Basal transcription factors
pno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    SNOG_14345
  09124 Replication and repair
   03420 Nucleotide excision repair
    SNOG_14345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pno03021]
    SNOG_14345
   03400 DNA repair and recombination proteins [BR:pno03400]
    SNOG_14345
Transcription machinery [BR:pno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     SNOG_14345
DNA repair and recombination proteins [BR:pno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     SNOG_14345
SSDB
Motif
Pfam: BSD PH_TFIIH HIP1_clath_bdg
Other DBs
NCBI-GeneID: 5981460
NCBI-ProteinID: XP_001804536
UniProt: Q0U1G8
Position
Unknown
AA seq 628 aa
MSSAAAQYKKQDGTVSVSADGKTVSWKSANGAAAPLSITIADIGNSAPQPGNFTLTFTSP
AARDDQQTITGLLRKWIEASKAQPASTPAPNPSDGDGAPGSMAMAQTVTAAAKGSDESYD
DAQLLTNLELQMSLLNTNPGLRQRFDRALAEKPDSVSLIQFTNQFWSTRVHMLRSHAIER
SQESGTYNVISVIKTVPVNGEQKLSITQEQIALVFRQHPIVQKAFNENVPPLTAEGFFER
FYHSRLMKKLKGERIREQDVLDPKLDKYLHYDEAADESLNLMDSIPLFINIEGNEQNHSK
KQGNRPDFTMNPSSHDKAPILRILNRMSEKLLKDVPNSDADRHAPVGVDEETYKELQLRD
LQRADEDNRVVLQVQDQGRLFASGQSMQSSTSAATYSQRTPAQALSILRQDFGVISANRS
KAIGVDLETTLGINDDSSSDEENAPSKKRKIGSKSSRKAATSQMVTAIRKRHLHDDDYYS
SKTIPIGEQAKKLSISESMLNNLNMIHNTTVEFLHYFWAVFHSGNPDRANEVAKLIETLD
RSLDRVKAVSDAAEAERATQVERYKREVENYNQRSGKKKKFDPEHVRGGAKAVDQIVEPL
LRAINAARSQYQTALQEQLRQTGAANAA
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgtccagcgctgccgcccagtacaaaaagcaggatggcacagtctccgtatctgcagac
ggcaagaccgtgtcctggaagtctgcgaatggcgcggctgctcctctatcgataactata
gcagacattgggaactctgcgccgcagccgggcaacttcaccctcaccttcacatctccc
gccgcacgcgatgaccagcaaaccatcactggcctcctgcgcaagtggatcgaggcttcc
aaggcgcaaccagcctccactccggccccgaaccctagcgatggagatggcgcgccaggg
tcaatggcaatggcgcagactgtcacggccgcggcaaaaggcagcgacgagtcctacgac
gatgctcagctgttgacaaacctggagctgcagatgtcgctactaaacacaaatccaggt
ttgcgccaaaggttcgatcgggcgctggcagaaaagcccgactccgtatcactgatacag
tttaccaaccagttttggtccacccgcgtgcatatgcttcgttcacacgcaatcgagcga
tcgcaggagagcggcacttacaacgtcatttctgtcatcaagaccgtacccgtgaacggt
gaacagaaactcagcataactcaggagcaaatagccctcgtgttcagacaacatccaatc
gtgcagaaagccttcaacgaaaacgttccccctctgactgcagagggttttttcgagagg
ttctatcacagtcgcctgatgaagaagctaaagggcgagcgaatacgggagcaagacgta
cttgaccctaagctggacaagtacctgcactacgacgaggcggcggatgagtctttgaac
ctgatggactcaataccgctattcatcaacattgaaggaaacgagcagaatcacagcaag
aagcagggcaatcgaccggacttcaccatgaacccttcttctcatgataaagcaccgata
ctacggattctgaatcgtatgagtgaaaagctgttgaaggatgtcccgaattccgatgcc
gatcgccacgctcccgtgggagtagacgaggaaacatacaaggaactacagctacgcgat
ctgcaacgtgcagacgaggacaacagagtggtgcttcaagtgcaggatcaggggcgactt
tttgcttcgggacaaagcatgcagtcctcgactagtgccgctacatattcccagcgtacc
cctgcccaggctctttcgatcttacgacaagattttggggtgatcagcgccaaccgaagc
aaagcgatcggagttgacctcgaaacaacgctcggcatcaatgatgacagcagcagtgac
gaagaaaacgccccgtcgaaaaagcgaaagattggcagcaaatcttcaagaaaagcagcc
acatcgcaaatggttacagctatccggaaacgacacctgcatgacgatgactactattcc
tccaaaacaatcccgatcggtgagcaagctaagaagctgtccatctccgagtcgatgctc
aacaacttgaacatgatacataacacgactgttgagttcctgcattatttctgggctgtc
ttccactccggcaatcccgaccgcgccaacgaagtcgcaaaactcatagagacactcgat
aggtccttagatcgagtcaaggccgtttcggatgctgcagaagcagaacgagcgacccag
gttgagcgctacaaacgggaggtcgaaaattacaaccagcgatccgggaagaagaagaaa
tttgatccagaacacgtcaggggtggagcgaaggccgtcgaccagattgtggaacccttg
cttcgcgcaatcaatgctgcgaggagtcagtatcagactgcgctgcaagagcaattgcgg
cagaccggcgcggcgaatgcggcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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