KEGG   Paenibacillus naphthalenovorans: IJ22_33530
Entry
IJ22_33530        CDS       T04167                                 
Name
(GenBank) ATP-dependent DNA helicase UvrD
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pnp  Paenibacillus naphthalenovorans
Pathway
pnp03420  Nucleotide excision repair
pnp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pnp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    IJ22_33530
   03430 Mismatch repair
    IJ22_33530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnp03400]
    IJ22_33530
Enzymes [BR:pnp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     IJ22_33530
DNA repair and recombination proteins [BR:pnp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IJ22_33530
   MMR (mismatch excision repair)
    Other MMR factors
     IJ22_33530
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 ResIII PcrA_UvrD_tudor nSTAND3
Other DBs
NCBI-ProteinID: ALS23714
UniProt: A0A0U2L238
Position
complement(3340793..3343027)
AA seq 744 aa
MEASSDFFNRKHKDHGVALNHVQKQAVLQTEGPLLLLAAPGSGKTTTMIMRIGYLIEVKG
VAPSRIKAVTFSRASASDMKERFTRFFPDLPPVDFSTLHSLAFEIVREHFRQTGTAYQMI
EGDIELEERVDFDSEHPPLHKKHILRHLFNTIVGEIITDDQMDELTTYISYIKNKMIPRE
EWPLVECDVKEAERILREYEAFKRSGSDKLLIDYDDMLTLGNEILERDKVLLRKYQQRYD
YVLTDESQDTSLVQHAIIEKLVRRHGNLCVVADDDQSIYGWRGAEPSYLLNFKQVYPKAV
ILFMEQNYRSSKDIVSAANQFIKRNKSRYDKNMFTHNPSHQPIKIRSLADYQDQAKYLVQ
EIQKVESLRDVAVLYRNNASSIPLMNEFDRAGIPFYMKDGDIRFFSHWVVKDILNFMRMT
FTDKRADILEEIHTKINGYITRRQMAALKEITNNESVFDNLLNYVELKDYQRKPLQECKE
TLQQMKGIPPLDAIRSIRRKLGYEKAVEKMSERLGFRKEYVFGILNTLEEIADGLETMED
FAKRLKYLESVMKSSRFNKNRNAVTFSTLHSAKGLEFKRVYMIDLIDGIIPSNDDLEKNG
AGKQEFMEEAVRLFYVGMTRAKMELKLITYQKRDGEKVKESLFVSDVRSIIAPPKPMQTQ
VPKEEPSKPHNPKAIRNKNELKLGSIVEHRVFGRGEIIKINGERIHIRFQAGVKALSILT
CIEAGLLEPAVRVEATSGENGYPV
NT seq 2235 nt   +upstreamnt  +downstreamnt
atggaagccagttcagattttttcaatcgaaagcacaaagaccacggcgtggccttaaat
catgtccagaagcaggcggttctgcagacggaggggcccttgcttcttttggcggctccg
ggttcggggaagacgactacgatgattatgcgaatcggctatctcattgaagtgaaggga
gtggctccgtcgcggatcaaggcggtgaccttcagccgcgcatcggcgtccgatatgaag
gagcggttcacacgctttttcccagatcttccacctgtcgatttctctaccctacacagt
ctggcctttgagatcgtccgggagcattttcgtcaaacgggaacagcctatcaaatgatt
gaaggggacatcgagttggaggagcgggtcgattttgattcggagcacccgccgctgcat
aagaagcatattttaagacatttatttaatacgatcgttggcgaaatcatcacggatgat
caaatggacgagctgactacgtatatcagctatattaaaaacaaaatgatccccagggaa
gaatggccgctcgtggagtgcgatgtcaaggaagctgaacggattctgcgggaatatgag
gcgtttaaacggtcgggctcggataagctgctgatcgattacgatgatatgctgactctg
ggaaatgagattctggagcgggataaggtactgctgcgcaaataccagcagcgatacgat
tatgtgcttacggatgaaagccaggacacctcactggtgcagcacgccatcatagaaaag
ctggtccgccggcatggcaatctttgcgtcgtagccgacgacgatcaatccatctacggc
tggagaggtgcggagccttcctatttgcttaacttcaagcaagtgtatccgaaagccgtt
attttgtttatggagcagaactacaggtcgtccaaagacattgtaagtgcggccaaccag
ttcattaaacgaaacaaaagccggtatgacaaaaacatgtttacccataacccgtctcat
cagccgattaaaatcaggagcttggccgattatcaagatcaggccaaatacttggttcag
gagatccaaaaggtggaaagcctgcgtgatgtggcagtgctgtaccggaacaatgcttct
tccattccattaatgaacgaatttgaccgggcggggattcctttttacatgaaggatggc
gatattcgatttttttcccattgggtagtgaaggacatcttaaactttatgcggatgacc
tttacggacaagcgtgcggatattttggaagagattcacaccaagatcaacgggtatatt
accagacggcaaatggccgcactgaaggaaataaccaataacgaatcggtctttgataat
ttgctgaattacgtcgaactcaaagattatcagcgtaaaccgctgcaggagtgcaaagag
accctccaacaaatgaaaggaattccgccgttggacgccatacgttcaattcggagaaaa
ttggggtacgagaaagccgttgaaaagatgagcgagcgtctgggcttcagaaaggaatac
gtgttcgggatcctgaacaccctggaagagattgccgacggtcttgaaacgatggaggat
tttgcgaagcggttaaagtatttggaatcggtgatgaaaagctcaaggttcaataagaac
cgcaatgcggtaaccttctccacgcttcacagcgcaaaaggcctggagtttaagcgggtt
tatatgatcgatttgattgacggcattatcccttctaatgatgatttggagaaaaacggt
gcagggaagcaggagttcatggaggaagcggttcgtttattctatgtggggatgacccgg
gcgaaaatggaactgaagctcatcacgtaccaaaaacgggatggcgaaaaggtaaaagag
tccctgtttgtttcggatgtccgcagcattatagctcctccaaagccgatgcaaacacaa
gtgcctaaagaagaaccgtcaaagcctcataacccgaaggcaatccgaaataaaaatgaa
ttgaaattgggtagcatcgtagaacatcgtgtatttggccggggagaaattattaaaatc
aacggggaacgaatccacatccgctttcaagccggcgtcaaggccttgtccattcttaca
tgcattgaagcgggattgttggaaccggcggtgcgggttgaagcaacaagcggtgaaaac
ggttatccggtatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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