KEGG   Pandoraea norimbergensis: AT302_02315
Entry
AT302_02315       CDS       T04226                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pnr  Pandoraea norimbergensis
Pathway
pnr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pnr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT302_02315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnr03019]
    AT302_02315
   03400 DNA repair and recombination proteins [BR:pnr03400]
    AT302_02315
Enzymes [BR:pnr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AT302_02315
Messenger RNA biogenesis [BR:pnr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AT302_02315
DNA repair and recombination proteins [BR:pnr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AT302_02315
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C NepR
Other DBs
NCBI-ProteinID: ALS58790
UniProt: A0A0U2P7R9
Position
4884573..4886378
AA seq 601 aa
MASALEVLRTVFGYNAFRGDQAAIVDHVAGGGDALVLMPTGGGKSLCYQIPALLRPGLGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLSFDEAIDTERRAARGELDLLYVAPERLLTD
RFLDLLDRLDERGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPSVPRIALTATAD
AATREEIQTRLGLTEAHLFVSSFDRPNIRYEIVDRDNPRKQLLTFLGRHRGEAGIVYCLS
RKKVEETAAWLETQGIPALPYHAGLDADVRRTHQQRFLREEGLVMSATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMAYGLNDVVVHRSRIDESNAPDLQKRIE
RQKLDALLGYCEAPRCRRTVLLSYFGESSEPCGNCDVCLNPPEVFDGTIAAQKALSAILR
TGQRFGAGHLVDLLRGRSTDKMRQFGHESLPTFGVGGELDDQGWRAVFRQLIAHGLIEPD
SSQYGALILNASARPVLKGETTLSLRRQRAVASKKSRFAGYASPAIELDPADQQLFDKLR
AWRQDMAKTQAVPAYVILHDRTLRELAQRRPRHRDGLVDITGLGEAKIERYGEALVELLN
A
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggcaagcgcactcgaagttctccgtaccgtattcggctataacgcattccgtggcgat
caggccgcgatcgtcgaccatgtggccggcggtggcgatgcgctcgtgctcatgcccacc
ggcggcggcaagtcgctgtgctaccagattcccgcgttgctgcgcccgggcctcggcatc
gtcgtctccccgctcatcgcgctcatgcaggatcaggttgacgcgctgctgcaagcgggt
gtgcgcgcggcctatctcaattccagccttagcttcgacgaggccatcgacaccgagcgg
cgtgccgcgcgcggcgaactcgatctgctctacgtcgcgccggaacggctgctgaccgat
cgttttctcgatctgctcgaccggctcgacgagcgcgggcaactggcgctcttcgccatc
gacgaagcgcactgcgtgtcgcagtgggggcatgatttccggccggaatacattcagctc
tcggcgctgcacgaacgctatccgagcgtgccgcgtattgcgctcacggccacggccgac
gcggcgacgcgcgaggaaatccagacccggctgggactcaccgaagcgcatctgttcgtg
tcgagctttgaccggccgaatatccgctacgaaattgtcgaccgcgacaacccgcgcaag
cagttgctgacgtttctgggacgacatcgcggcgaggccgggattgtctactgcctgtcg
cgtaagaaagtggaagaaaccgccgcctggctggagacgcaaggtattccggccctgccc
tatcacgcgggtctcgacgcggatgtgcgccgcacccatcagcagcggtttctacgagaa
gaagggctggtgatgtcggcgacggtcgccttcggcatggggatcgacaagccggacgtg
cgctttgtcgctcatctggacttgcccaagagtctcgaagcctactatcaggaaaccggc
cgcgcgggccgtgacggcgaaccggctgaggcgtggatggcctacgggctgaacgacgtg
gtggtgcaccgcagccgtatcgacgaatccaacgcgccggacctgcaaaagcgcatcgag
cgtcagaagctcgacgccctgctcggctattgcgaagccccgcgctgccgccggaccgtg
ctgttgtcgtacttcggcgagagcagtgagccgtgcggcaactgcgacgtgtgcctgaac
ccacccgaagtcttcgatggcacgattgcggcccaaaaggcgctgtcggccattttgcgc
accggtcagcgctttggcgccggccatctggtcgatctgctgcgcggacgcagcaccgac
aagatgcgccagttcggtcacgagagcctgccgacgttcggcgtcggcggtgaactggac
gatcagggctggcgtgcggtgttccgtcagttgatcgcccacggcctgatcgagccggac
agcagccaatacggcgcgttgattctgaacgcgtctgcacgcccggtgctcaagggcgaa
actacgctgtcgctgcggcgtcagcgcgcggtcgccagcaagaagagtcgctttgccggc
tacgcgtcgccggccatcgagctggatccggccgatcagcagttgttcgacaagctgcgc
gcttggcgacaggacatggcaaaaacgcaggcggtacccgcgtacgttattcttcacgac
cggacgttgcgagaactggcgcagcgccgcccgcgtcaccgcgacggactggtggacatc
accggtctgggcgaagccaagatcgagcgctatggtgaagcgctggtcgagttgctgaac
gcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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