KEGG   Polaribacter vadi: LPB03_13800
Entry
LPB03_13800       CDS       T04504                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pob  Polaribacter vadi
Brite
KEGG Orthology (KO) [BR:pob00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pob03032]
    LPB03_13800
   03400 DNA repair and recombination proteins [BR:pob03400]
    LPB03_13800
Enzymes [BR:pob01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     LPB03_13800
DNA replication proteins [BR:pob03032]
 Prokaryotic type
  DNA Topoisomerases
   LPB03_13800
DNA repair and recombination proteins [BR:pob03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      LPB03_13800
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4
Other DBs
NCBI-ProteinID: AOW18462
Position
3192179..3194731
AA seq 850 aa
MAKNLVIVESPAKAKTIEKFLGKDFQVESSYGHIADLPSKELGIDVDGDFSPKYIISDDK
KPVVKKLRALAKKADTVWLASDEDREGEAIAWHLKEQLELKDENTKRIVFHEITKKAILK
AVENPRDIDYNMVNAQQARRVLDRLVGYELSPVLWRKVKGGLSAGRVQSVAVRLIVEKER
SIQEFTAETHYKVVAEFSNNEGKTFKATIPKNFDSKKAAETFLKSCAKADFSIADLTKKP
AKKSPAAPFTTSTLQQEASRKLGFAVGRTMQVAQRLYEAGLITYMRTDSVNLSVDARDEA
EEEITASYGKEYSKQRVFKSKSKGAQEAHEAIRPTNMKMHSVNVEYDQDRLYDLIWKRTL
ASQMSDALLERTNMKIENTENSKIFTANGEMIKFEGFLKVYLEGKDDDEEEQAGMLPNLQ
VGESLDYTFINATQRFTSPPYRFTEASLVKQLEELGIGRPSTYAPTISTVQRRGYVEKGQ
NEGVEREYEQMILSNGAVKSEILTEKTGSDKNKLIPTDIGNIVNDFLVANFSNILDFGFT
AKVENSFDDISEGQENWIEMIKGFYTNFHDNVEDVKENADRESGERILGKHPESGKTVLV
RLGKFGPIAQIGAPEDEEKTFASLNKDQNLGTITMEEALELFLLPKTLGTYEGEEVIVSN
GRFGPYIKFGTMFVSLDKGENPMEVDLQRAEELIVAKQKADAPIYHYEDLPVQKGVGRFG
PFIKWNSMFINVNKKYDFDNLSDDDIVELIEVKKQKEIDKVLHNWEDVGIRVEKARWGRF
NVLKGKIKIELPKTTDIENLSKEEAVKMIEAKTPKKKAAKKKPVAKKKAPAKKNSKKEII
ICYIAYPIKN
NT seq 2553 nt   +upstreamnt  +downstreamnt
atggcaaagaatttagtaattgtagagtcgccagcaaaggcaaaaaccatagaaaaattt
ctcggaaaagattttcaagtagaatctagctatgggcatattgcagacttaccttctaaa
gaattaggaatagatgttgatggtgattttagcccaaaatatattatttcagatgataaa
aaacctgttgttaagaaattaagagcattagcaaaaaaagcagacactgtttggttagca
agtgatgaggatagagagggagaggcaattgcttggcatttaaaagagcaattagaattg
aaagatgaaaatacaaaacgaattgtttttcatgaaattactaaaaaagccattttaaaa
gcagtcgaaaatcctagagatatcgattataacatggtaaatgcacaacaagcacgtaga
gttttagataggcttgttgggtacgaattatcgccagttttatggagaaaagttaaagga
ggtttgtctgcaggtagagtacaatctgtggcagttcgtttaattgtagaaaaagaaaga
agcattcaagaatttactgcagaaacacattataaagttgttgcagaattttctaacaac
gaaggcaaaacctttaaagcaaccattccaaagaatttcgattctaaaaaagctgcagaa
acatttttaaaatcgtgtgcaaaagcagatttttcaattgctgatttaactaaaaaacca
gcaaaaaaatcgccagcagcaccttttacaacatcaacattacaacaagaagcatctaga
aaacttggttttgctgttggtagaactatgcaggttgcacaacgtttgtacgaagctggt
ttgattacttatatgagaacagatagtgtaaatttatctgtagatgccagagatgaagct
gaagaagaaattacagcttcttatggaaaagaatacagcaaacaacgtgtttttaagtcg
aaatctaaaggagcacaagaagctcacgaagccattaggccaaccaacatgaaaatgcat
tctgtaaatgttgaatatgaccaagatagattatacgatttaatttggaaaagaaccttg
gcttcgcaaatgagtgatgctttattggaacgtaccaacatgaagattgagaatactgaa
aactcaaaaatctttactgcaaatggtgagatgattaagtttgaaggtttcttaaaagtg
tatttagaaggcaaagatgatgatgaggaagaacaagcaggaatgttaccaaatttacaa
gttggtgaaagtttagactacacatttataaatgcaacacagcgttttacaagtccacct
tatagatttacggaagcatctttggtaaagcaattggaggaattaggcattggaagacca
tctacttatgcaccaacaatttctacagttcaaagaagaggttatgtagaaaaagggcaa
aatgaaggtgtagaaagagaatatgaacaaatgattttatcaaatggcgctgtaaaaagt
gaaattttgacggaaaaaacaggttcagataaaaacaaattaattcctacagatattgga
aacattgtaaacgactttttagtggccaatttttcaaatattttagattttggttttact
gctaaagttgaaaattcttttgatgatatttctgaaggacaagaaaactggatagaaatg
attaaaggtttctacacaaattttcatgataatgtagaagatgtaaaagaaaatgcagac
agagaaagtggagaacgtattttaggaaaacacccagaatctggtaaaacagttttagta
agacttggtaaatttggacctattgcccaaattggagctccagaagatgaagaaaaaacg
tttgcaagtttaaataaagatcagaatttaggcacaataaccatggaagaagccttggag
ttgttcttattacctaaaactttaggaacttatgaaggggaagaagtaattgtttctaat
ggacgttttggaccttacattaagttcggaactatgtttgtttctttggataaaggcgaa
aacccaatggaagttgatttgcaaagagcagaagaattaattgtagctaagcaaaaagca
gacgctccaatttatcattatgaagatttacctgtgcaaaaaggcgttgggcgttttgga
ccttttataaaatggaactccatgtttataaacgtaaataaaaaatacgattttgataat
ctttctgatgatgatattgttgagctaattgaagttaaaaagcagaaagaaatagataaa
gttcttcataattgggaagatgttggcattcgagttgaaaaagcaagatggggacgtttt
aatgttttaaaaggtaaaattaagatagagttgccaaaaactacagacatagaaaactta
tcgaaagaagaagctgttaaaatgattgaggcaaaaactccaaagaaaaaagcggcaaaa
aagaagcctgtagcaaaaaagaaagctccagctaaaaaaaacagcaaaaaagaaataatc
atttgttatattgcatacccaattaaaaattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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