KEGG   Populus trichocarpa (black cottonwood): 18101218
Entry
18101218          CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC18101218
  KO
K14544  U3 small nucleolar RNA-associated protein 22
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    18101218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pop03009]
    18101218
Ribosome biogenesis [BR:pop03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    18101218
SSDB
Motif
Pfam: Nrap_D5 Nrap_D4 Nrap_D3 Nrap Nrap_D2 Nrap_D6 HALZ
Other DBs
NCBI-GeneID: 18101218
NCBI-ProteinID: XP_006380764
UniProt: U5G8G9
Position
7:1895292..1903300
AA seq 1051 aa
MDSDTLTEPMDFKVSELINEVQIEHSPSFTKLVNDTVSSIQNSIDKIPNNLVVTGEEAAG
FVRDVGADKVEFKFKKPKSIAIGGSYSIKCVVKPDVSVDLFIQLPKECFHEKDYLNHRYH
AKRFVYLCVINKFLKSDSSFEKVEWSTLQNEARKPVLLVYPADKLAEIPGFFVRIIPTAK
SLFNTAKLDLKRNNVRVLNQGGTALPTPRYNSSILEDMCLEDNTEFLKKTFLGQKALGEA
LVLLKVWARQRDSIHSHDSLNGYLIAIILSYLVAYEKVNSSMRPLQIFRVTLDFIANSKL
WTRGLFLQKQGEVKILKEDRMLYKESFPVVIFDSTTHINLTFRIKDSGFSELQDEAAQTL
QCFGKSGDSAFEDIFMTKIDFPARYDYCVRLSLKGNSEFYSSGYCLDEECWRLYEKKVQS
LLSQGLSDRAKSIRVIWRNIPSGCSLENGLSTLDGEPLLAGISLSSLDKAFRVVDIGPDA
ENKEEAARFRKFWGEKAELRRFKDGKIAESTVWESEQWKKHLILKRIVEYILLRHLSISK
TSIEQTVDQLDFSLLHGVEDPMSFSASLLGAFDILSKRLRLIEDIPLKVSSVQPLDPAFR
FTSVFPPEPHPIASEKGNVPRPHKLTSSCIQPLEVMIQLEGSGNWPMDDVAIEKTKSAFL
LKIGESLENSWGMTCTATEDDVDVFLSGYAFRLKILHERGLSLVKRETGSDQGKQVSSAD
QKLFVRSQHSSMINGLQGVFPIYGPVVRLAKRWVASHMFSACLSEEAIELLVAHLFVKPL
PFTAPCSRITGFLRFLRLLAEYDWTFSPLIVDINSDFNPSDKKEIYDKFMLTRKGYEESS
QNISPAMFLATSYDKASEAWTRLSPNVLELKRLVAYARSSANLLTRLVFQDQTESYRWEC
LFCTPLTNYDAVILLHGDRLPYPQRLLFPSKLNHGRLVARGNASKAFQPFMLPGDLRGSL
DKLKNKLLVDFDPLRCYIADLEKECNTLKMWYDSLGGDAIGLTWERSCSKKRDREEASSD
EDPIDVLKAVGEAGKRFVKSVHFLKAPRLMN
NT seq 3156 nt   +upstreamnt  +downstreamnt
atggattccgatactctaacagaaccgatggactttaaagtatcagaattaataaacgaa
gttcaaatcgaacattctccctctttcaccaagctcgtaaacgacaccgtttcatctatc
caaaattccatcgacaaaatccctaacaacctcgtggttacaggcgaggaagcggcgggg
ttcgttagagacgtcggagcggataaagtggagtttaagtttaagaagccgaaatcgatt
gcaattggtggcagttattcgataaagtgtgtcgtgaagccggatgttagtgttgacctt
ttcattcaattgcctaaggagtgttttcatgagaaagattatttaaatcatcgctatcat
gcgaagaggtttgtttatttatgtgtgattaacaagttcttgaagtcggattcatcgttt
gaaaaggttgaatggtctacgcttcaaaacgaggcccggaaacctgtgctgcttgtctat
ccagctgacaagcttgccgaaattcctgggttctttgtgaggataattcctacagcgaaa
tctttgtttaatactgcaaagttggacttgaaacggaacaatgtccgtgttttgaatcaa
ggtgggactgctttgcctacaccaagatataacagtagtattttggaagacatgtgttta
gaggacaatacagaatttctcaagaaaacttttcttggacagaaggcattgggagaggct
ttagttttgctgaaggtttgggctcgacagagagattctatacattctcacgatagccta
aatggatatttaatagctatcatattgtcatatcttgtggcttatgagaaggttaatagt
tccatgaggccactgcaaatatttcgagtcaccttggacttcatagccaattcaaaatta
tggactcgggggcttttcttacaaaagcaaggtgaggtcaagatattgaaggaggatagg
atgctgtataaagaatcatttccagttgtcatattcgattcaaccactcacatcaattta
acttttcggataaaagatagtggtttctcagagctccaagacgaggctgctcagacactt
caatgctttgggaaatctggagatagtgcatttgaggatatcttcatgaccaagattgac
tttcctgccagatatgattattgtgtaagattgagcttaaaaggaaatagtgagttctat
tcttctggatattgcttggacgaagaatgttggagattgtatgagaaaaaggtgcagagt
cttctatctcaaggactgagtgatcgagccaagtcaattcgtgttatttggagaaatatc
ccttcaggttgcagtctggaaaatggtttgtcaacacttgatggagaaccattgctagct
ggaatttctctaagctctttagataaagcatttcgagttgttgatattggtccggatgct
gaaaataaagaagaggctgccaggtttcggaagttttggggggagaaagcagagctcagg
agatttaaggatggcaaaattgctgaaagcacagtatgggaaagtgagcagtggaagaaa
catctcattttaaaaagaatagtagaatatatacttcttcgtcatctttctatatcaaaa
accagtattgagcaaactgtggatcaacttgacttttctcttcttcatggtgttgaagat
cctatgtcattttctgcaagtttgcttggggcatttgatatcctatcaaagcgcttgcgt
cttatagaagacattcccttgaaggtgtccagcgtgcagcctttagacccagctttcagg
ttcacatctgtcttccctcctgaaccacacccaatagcaagtgaaaagggtaatgttcca
agaccacataagctcacttcatcctgcatccagccattggaagttatgattcagttggaa
ggttctgggaactggccaatggatgatgtggcaattgagaaaaccaaatctgcttttctt
ctcaaaattggagagagtctcgagaatagttgggggatgacatgtactgcgactgaagat
gacgtggatgtttttctgtctggatatgcatttcgtctaaaaattttgcacgagagaggc
ttgagcttggtgaaaagagaaactggaagtgaccagggaaaacaggtctcttctgcagac
cagaaactctttgttcgcagtcagcattctagcatgattaatgggttgcaaggtgttttc
ccaatatatgggccagttgttaggcttgctaaaagatgggttgcgtcacatatgttctcg
gcatgcttgtcagaggaggcaattgagttattggttgcgcatctctttgtgaagcctttg
cctttcactgctccttgttcacgcatcactggatttctaaggttcttgcgattgctagca
gagtatgattggaccttttctcctcttattgttgacataaatagtgatttcaacccaagt
gataagaaagagatttatgacaagtttatgctgactagaaaaggttatgaagaaagtagc
caaaacataagtccagcaatgttcttggcgacatcctatgacaaggcatctgaagcttgg
accagactctcaccaaacgtactggaacttaaaaggttggtggcttatgctcgtagcagt
gcaaacctgcttaccagactcgtatttcaggatcagacagaatcttacagatgggagtgc
cttttctgcactcctcttaccaactatgatgctgtaatccttctccatggggacagatta
ccatatcctcaacgtcttctcttcccttcaaaattaaaccatgggaggcttgtggctcgt
gggaatgctagcaaagctttccagccctttatgttacctggagatttacgagggagctta
gacaagttgaaaaataagctattggtggactttgatccacttaggtgctacattgcagat
ctggagaaagaatgcaacacattgaagatgtggtatgattctctgggaggcgacgccatt
ggactaacatgggagagatcttgttcaaagaagcgggatcgagaagaagccagcagcgat
gaagacccaattgatgtcttaaaggctgtgggtgaagctggtaaacggtttgtaaagagt
gtacattttctcaaggctccaaggctcatgaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system