KEGG   Populus trichocarpa (black cottonwood): 7485601
Entry
7485601           CDS       T01077                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28 isoform X1
  KO
K13181  ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7485601
   03009 Ribosome biogenesis [BR:pop03009]
    7485601
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     7485601
Spliceosome [BR:pop03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    7485601
Ribosome biogenesis [BR:pop03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    7485601
SSDB
Motif
Pfam: DEAD Helicase_C ARTD15_N AAA_22 RuvA_C
Other DBs
NCBI-GeneID: 7485601
NCBI-ProteinID: XP_002306942
UniProt: A0A2K2ALT0
Position
5:23798553..23806293
AA seq 744 aa
MAPSFVFEPPSDEEVELSEAEELEDEEEEAEGEGEEEKPSKRRQKQSPWDFASYSESVAE
EHARRSTTSIDDKISRARQQHSTPLTEHADDASSSDSEPDKQEVYKGEDDEGDEDTNVEE
RKSFFAPSEGTSFHANSFMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSA
ITGSGKTAAFALPTLERLLFRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL
VVGGLSTKVQEASLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFN
AEIHELVRLCPKRRQTMLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRL
RRMREVNQEAVLLALCSKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQR
LDALELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGY
AVTFVTDNDRSLLKAIAKRAGSKLRSRIVAEQSIIKWSQMIENMENQVADVLQQEREERA
IRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEREKMLAAKAAKQSSVEKEKGSGNEVMS
AQQAEDLKMKEKRKREREKNLPRKKRRKLQAAREMLEDEDLTEKSEGSGKNKKEKTGLSL
VDLGYRRAKAAKAVKKAMDAGKFVQKKGSKKSKQPPERTQSRTEEMQELFQSDMSEKKQK
RRSSGTGNKKSKNSFKSKSRYKRK
NT seq 2235 nt   +upstreamnt  +downstreamnt
atggctccaagcttcgtatttgagcctcctagcgacgaagaagttgaattgtcagaagca
gaagaactggaagacgaggaagaagaagcggaaggagaaggagaagaagagaaaccatca
aaacggcggcagaagcagtcgccttgggactttgcttcctactccgaatccgtcgccgaa
gaacacgctcgtcgaagcacaacttccatcgatgacaaaatctcaagagctcgccaacaa
cactccactcctttaactgaacacgccgacgatgctagttcctcggattccgaacctgac
aaacaagaagtgtataagggggaagatgacgagggtgatgaggatactaatgtagaggaa
aggaagtcattttttgcgccttcagaaggaacttctttccatgccaattcgtttatggag
cttaatctatctcggccactgcttcgagcttgcgaggctttaggttatactaagcctact
ccaattcaggcggcttgtataccgttggccctcaccgggcgtgatatttgcgggagtgct
attactggttcagggaagacagcagctttcgccttacctactttggagagattactgttt
cgtccaaaacgtattctagcaataagagtccttattctaactcctaccagagaattggcg
gttcaggttcacagtatgattgagaaaattgcgcaatttacggatataagatgttgcttg
gttgttggagggctttctacaaaggtgcaagaagcttccttgagatcaatgccagatatt
gttgtagctactccagggcgcatgatagatcatttacgcaattctatgtcagttgatttg
gatgatctagcagttttaatccttgatgaagcagaccgacttctggagcttggatttaat
gctgaaattcacgagctggttcgactttgtcccaaaaggaggcagaccatgctattttca
gctactatgactgaagaagttgatatgcttataaagctttctctaaccaaaccactgcgt
ctctctgctgatccatctgcaaaacgaccagcagcattgactgaggaggtgcttagacta
cgcaggatgcgtgaggtcaaccaggaggcagtcctccttgcattgtgctcaaaaactttt
acatctaaagcgatcatcttcagtggaaccaagcaagctgcacataggttgaagattttg
tttggattagcgggttttaaagctgctgagcttcatggaaatcttacacaggcccagcgt
cttgatgctttggaacttttcaggaagcaggaagtcgactttttgattgcaacggatgta
gctgctcgaggacttgatattattggtgttcagacagttatcaattatgcatgtccccgt
gaccttactagttacattcacagagtgggtcgtactgcgagagctggtagagaaggatat
gcagttacatttgtgacagataatgatcgatcccttttgaaagccattgcaaagagagct
ggttcaaagttgaggagccgtattgttgcagagcaatcaattattaagtggtctcagatg
attgagaacatggaaaatcaagtggctgatgttcttcaacaagagagggaagagagagca
ataagaaaagctgaaatggaagcaaccaaggcagaaaatatgatcgcacacaaggatgaa
atcttttcacgtcccaaaaggacttggtttgtaacagagagagagaaaatgctcgcagca
aaagcagcaaagcagtcatcagttgaaaaagaaaaaggttctggaaatgaggtgatgagt
gcccaacaagccgaagaccttaaaatgaaggaaaagaggaagcgagagcgtgagaaaaat
ttaccccgtaaaaagcgtcgaaaattacaagcagccagagagatgctagaggatgaagat
ttgacagagaaatcagaaggcagtggaaaaaataagaaagaaaagactggactatcacta
gtcgatctgggttaccggcgggcaaaagcagcgaaggctgtgaagaaggcaatggatgcg
ggcaagtttgtgcagaagaagggtagtaagaaatcaaagcagcctcctgaaagaactcaa
tcaaggacagaagaaatgcaggagctattccagagcgatatgagtgagaaaaagcagaag
agaagaagtagcggaacaggaaacaagaagtccaagaattcattcaaaagcaaatcaagg
tataagcgcaagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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