KEGG   Populus trichocarpa (black cottonwood): 7494729
Entry
7494729           CDS       T01077                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
  KO
K12811  ATP-dependent RNA helicase DDX46/PRP5 [EC:5.6.2.7]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7494729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7494729
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     7494729
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 related factors
    7494729
 Complex B
    7494729
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 7494729
NCBI-ProteinID: XP_024457957
Position
5:24795189..24800186
AA seq 1164 aa
MEDVKPKSRKNDYLARKEEKEDSKRIHRDRDKQRNGERHRDREKRERENSRCSERDKSSD
SDDKEREKEKHRVRGRDDRATRSRVDDRERVKDRKRDRDREERDRERDIAKEEKKERERE
KEKEREKEREKEKEKERVREKDRERESGKREREREKDRERERRERDREEREREKGREKRE
RRTREREKHRELSSDSDDDSGEHDSKLRRRDNDDSKERVHEQSISRSNRHMDNSEESLRK
KSGKEDGDKNESKTREDELEEEQKKLDEEMEKRRRRVQEWQELRRKKEETESEKGGEEAN
VDESKSGKTWTLEGESDDEEAPPTGKSDMDIDQEENAIPDKEAGDAMVVDTENDISAPQS
EVDAVNGDEEIDPLDAFMNSMVLPEVEMLNNAVVTQTADDNKADSKKKDKNDEGINGGQR
KKGSHKSLGRIIPGEDSDSDHGDLENSEVPLEDEDDDEFMKRVKKTKAEKLSIVDHSKID
YSPFRKNFYIEVKEILRMTPEEVTAYRKLLELKIHGKDVPKPIKTWHQTGLTSKILETIK
KLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIG
LIMAPTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID
ILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDHQTVLFSATFPRQVE
TLARKVLNKPVEIQVGGRSVVNKDINQLVEVRPEGERWFRLLELLGVWSEKGKILVFVQS
QDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKDL
ELVINYDVPNHYEDYVHRVGRTGRAGRKGCAITFFSEDDARYAPDLVKALELSEQVVPQD
LKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAREYGFEEEKSDSE
DEDEVVRKAGGDISQQTALAQQIAALAAVSKIPAPVAPTPHSVTQFLSNGGLPVPLNQGP
AVASVTGLPFAHSNEAAARAAAMAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARW
KVTHKETLGPISDWTGAAITTRGQFFPPGKVPGPGDRKLYLFIEGPTEQSVKRAKADLKH
VLEDITNQTYQLPGGAQPGKYSVV
NT seq 3495 nt   +upstreamnt  +downstreamnt
atggaggatgtgaaacctaaatctagaaaaaatgattatttggcacggaaggaggagaaa
gaggattctaagaggattcatcgagatagagacaagcagaggaatggagagaggcacaga
gacagagagaagagagaacgcgaaaacagtaggtgttccgagagagacaagagtagcgat
tctgatgacaaggaaagggagaaagagaagcacagagtcagaggtagggatgatagggca
acaaggagtagggttgatgatagagagagagttaaggacaggaagagagatagagacaga
gaagagagagacagggagagggacatagcgaaagaggagaagaaggagagggagagggag
aaggagaaggagagggagaaggagagggagaaggagaaggagaaggagagggttagggag
aaagatagagaaagagaaagtgggaagagggaacgtgagagggagaaagacagagaaagg
gagaggagggagcgtgacagagaagagcgagaaagggagaagggcagggagaagagggag
aggaggaccagggaaagggagaagcatagggaattgagtagtgacagtgatgatgactca
ggggagcatgatagtaaactgcgaaggagagacaatgacgactccaaggagagagtgcat
gagcagagcattagcaggtcaaacaggcacatggataacagtgaagagagcctaaggaaa
aagagtggcaaggaggacggtgataagaacgagagtaaaacccgagaagatgaattagag
gaggagcagaagaaattggatgaggagatggagaagaggaggagaagagtccaggaatgg
caagagctgagaaggaagaaggaagaaactgagagtgaaaagggtggggaagaagccaat
gttgatgaatctaagagtggtaaaacctggactcttgaaggagaatctgacgacgaagaa
gcacctcccactggcaaatccgatatggacattgaccaggaggaaaatgcaatacctgat
aaagaagctggagatgcaatggtggtggacactgagaatgacatttctgctccacaaagt
gaggttgatgctgttaatggggatgaggaaattgatccattggatgctttcatgaattct
atggtcttacctgaggttgagatgctaaacaatgctgtggttactcagactgctgatgat
aataaagcagactcaaagaagaaagataagaatgatgaaggaataaatggaggacagcgg
aagaaaggctctcataaatctctagggagaattattcctggagaagattctgattcagac
cacggggaccttgaaaatagtgaagttcctttagaagatgaggatgatgacgagttcatg
aagagggtgaagaaaacaaaagctgagaaactgtccattgttgaccactcaaagattgat
tacagtcctttccgcaagaatttctatattgaagtgaaggagatcttgaggatgactcct
gaggaggttactgcttataggaaactactggagttgaaaatacatggaaaggatgtgccg
aaaccaattaaaacttggcaccagacaggactcacaagtaaaattttggagacaataaag
aaacttaattatgagaaaccgatgacaattcaagctcaggcactgcctataattatgagt
ggacgggactgcataggcattgcgaaaactggttctggtaaaacccttgcatttgtgctg
ccaatgctgaggcatatcaaggaccagcctcctgtagaagctggagaaggaccgattggg
cttataatggcgcccacaagggagcttgtgcagcagatccacagtgatattaggaagttt
actaaggccctgggtataagatgtgtgcccgtttatggaggttctggtgtagcccagcaa
attagtgaattgaaacgggggacagagatagttgtctgtactccaggcaggatgattgac
atactttgcaccagtggagggaaaatcaccaatcttcgtagagttacatatctggttatg
gatgaagccgaccggatgtttgacatgggattcgaacctcaaatcactagaattgtccaa
aatattcgtccagatcatcaaactgtactcttttctgccactttccctcggcaggttgaa
actttggctcgtaaagtactgaacaaacctgtggaaatacaggtaggtgggaggagtgtg
gtgaataaggacatcaatcagctggttgaggtaagaccagaaggtgaaaggtggtttagg
ttgttagaactacttggtgtatggagcgagaagggaaaaattttggtatttgtccaatca
caggacaaatgtgatgcgttgtttagggacttgctgaagtttggtcatccttgcctctca
cttcatggggctaaggatcagacggaccgtgaatccaccatttcggattttaagagcaac
gtctgcaatttgttgattgcaacaagtgttgcagccagaggcttagatgtgaaggatcta
gaactggtgatcaattatgatgttccaaatcattatgaggattatgttcaccgtgttggt
cggactggccgagctggtcgcaaaggctgtgccatcacttttttctccgaggatgatgca
agatatgcaccggatcttgtaaaagcattagaactctctgagcaagttgttccacaagac
ttgaaagcccttgctgatggttttatggtgaaagtgaatcagggtctggagcaagcccat
ggaactggttatggtggaagtggttttaaattcaatgaggaagaggatgaaaagagaatg
gcggcaaagaaagcacaagcaagagaatatggcttcgaggaagagaagtctgattcagaa
gatgaagatgaagttgttcggaaggcaggtggtgacatctcacagcagactgcccttgct
cagcagatagctgctcttgctgctgtctcaaaaatccctgcacccgtggcaccaactcct
cactctgttactcaatttctttctaatggtggattacctgttcctctcaatcaaggtcca
gcagttgcatctgtgactgggctgccttttgctcatagtaatgaagctgcagccagggca
gcagcaatggcagccgccatgaatttgcaacacaacctggcaaggatccaagctgatgca
atgcctgaacattatgaagcagagctggaaatcaatgattttccccaaaatgctcggtgg
aaggttacccacaaggaaactttgggcccaatttcagattggactggtgctgccattacc
accagggggcagtttttcccaccaggcaaggtgccaggaccaggagatcgcaagctgtac
ctgttcatcgagggccctactgagcagtctgttaagagagctaaagctgatctaaaacat
gttttggaagacatcacgaaccaaacatatcaacttcctggtggagctcaaccaggcaaa
tactcggttgtataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system