KEGG   Paralichthys olivaceus (Japanese flounder): 109626622
Entry
109626622         CDS       T06037                                 
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:pov00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pov03016]
    109626622 (trub1)
Enzymes [BR:pov01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     109626622 (trub1)
Transfer RNA biogenesis [BR:pov03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    109626622 (trub1)
 Prokaryotic type
    109626622 (trub1)
SSDB
Motif
Pfam: TruB_N TruB_C_2 GAIN_A Pus10_C
Other DBs
NCBI-GeneID: 109626622
NCBI-ProteinID: XP_019938273
Position
Unknown
AA seq 279 aa
MARNMSTSFVPITSSLSQLQSLNGLFAIYKKQGPTSADLLNTFKDALLKEAGVQNPNSRK
RKKQSLKMGHGGTLDSAASGVLVVGVGYGTKKLSTMLAGSKKYVAVGELGKATDTLDATG
KVILEKDFEHITRQDFEEKLKSFTGDIMQVPPLYSALKKDGQRLSVLLKKGQKVEAKPAR
PVTVYNLTLQEFKPPLFTLDVECGGGFYVRSLVDDLGKALSSCAHVKNLVRTKQGQFTLE
EHALHEEQWTLEHVLHSLQPCTQLEQGTKPSEEHNVNRT
NT seq 840 nt   +upstreamnt  +downstreamnt
atggccaggaacatgagcaccagctttgtccctataactagttccttgtctcaattgcag
tctctgaatgggctctttgccatttataaaaaacaagggcctacgtctgcagacttgttg
aatacgttcaaagacgctctgctcaaagaagccggtgtacaaaacccaaactcgcgtaaa
agaaagaagcagagcctgaagatggggcacggagggactttggacagtgctgccagtgga
gtgttagttgtaggtgttggatatggcacgaaaaagctcagtaccatgttagctggttca
aagaaatatgttgctgtgggggagctgggaaaagcaacagacactcttgatgctactggt
aaagtgattctagagaaagactttgaacacataaccaggcaagattttgaggagaagctg
aaatccttcactggtgacatcatgcaagttcctccactctactctgctctgaagaaggat
ggccagcgtctgtctgtcctgctgaaaaaaggtcagaaggttgaggccaaacctgccaga
ccagtcactgtgtacaacctgactctgcaggagttcaagcctcctctcttcactctagat
gttgagtgtggtggtggattttatgtcagaagcttggtggatgacctggggaaagctctg
tcatcctgtgctcatgtgaagaatctggtgcgcaccaagcaaggtcagttcaccctggag
gagcatgccttacacgaggagcagtggacactggagcatgtcctgcactctctgcagccc
tgtacacagttggagcagggtactaaaccatcagaggaacacaatgtgaacaggacctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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