KEGG   Onion yellows phytoplasma OY-M: PAM_603
Entry
PAM_603           CDS       T00154                                 
Symbol
lpd
Name
(GenBank) fatty acid/phospholipid biosynthesis enzyme
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
poy  Onion yellows phytoplasma OY-M
Pathway
poy00010  Glycolysis / Gluconeogenesis
poy00020  Citrate cycle (TCA cycle)
poy00260  Glycine, serine and threonine metabolism
poy00280  Valine, leucine and isoleucine degradation
poy00620  Pyruvate metabolism
poy00630  Glyoxylate and dicarboxylate metabolism
poy00640  Propanoate metabolism
poy00785  Lipoic acid metabolism
poy01100  Metabolic pathways
poy01110  Biosynthesis of secondary metabolites
poy01120  Microbial metabolism in diverse environments
poy01200  Carbon metabolism
poy01210  2-Oxocarboxylic acid metabolism
poy01240  Biosynthesis of cofactors
Module
poy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:poy00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    PAM_603 (lpd)
   00020 Citrate cycle (TCA cycle)
    PAM_603 (lpd)
   00620 Pyruvate metabolism
    PAM_603 (lpd)
   00630 Glyoxylate and dicarboxylate metabolism
    PAM_603 (lpd)
   00640 Propanoate metabolism
    PAM_603 (lpd)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PAM_603 (lpd)
   00280 Valine, leucine and isoleucine degradation
    PAM_603 (lpd)
   00310 Lysine degradation
    PAM_603 (lpd)
   00380 Tryptophan metabolism
    PAM_603 (lpd)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    PAM_603 (lpd)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:poy04147]
    PAM_603 (lpd)
Enzymes [BR:poy01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     PAM_603 (lpd)
Exosome [BR:poy04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   PAM_603 (lpd)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored DAO HI0933_like GIDA AlaDh_PNT_C FAD_binding_2 NAD_binding_8 FAD_binding_3 2-Hacid_dh_C UDPG_MGDP_dh_N Trp_halogenase Thi4 3HCDH_N NAD_Gly3P_dh_N Lys_Orn_oxgnase HNF-1B_C
Other DBs
NCBI-ProteinID: BAD04688
UniProt: Q6YPX2
Position
681596..682969
AA seq 457 aa
MKNYDVLVIGGGPGGYVAAIKAAQMGAKVALVEKHKLGGICLNYGCIPTKAYLKSAKMYK
DIKRCADFGIKVQNGVSFDWSSILSRKNKIVAQLTTGISFLLKKNKIDFYHGFASVLSPC
EVQVDTNLLHTQKLIIATGSTAFVTPIPGAQEAYQKGILKTSKELLQLESYPSKVTIVGG
GVIGVEFATIFNSFGSEVTILERQDNILNGMDRDVVVAYTKKLQADGIQILTQVEVTKIN
DNQTTYTQKGNAKTITSDVILMAVGTKANLAGLEKLNLALNRNSVQTDNFCQTSIPGVYA
IGDVNGKHMLAHVASHEGIVAVTHALEQKAQPINYDRVPACIYGFPEIASIGMTEQQAKE
KQMDYKVSKISLGAVGKSLADGEKEGFAKLIVCKKHLEILGMHIYAYNATELISEMAVGM
ELEGTAYELSQAIHPHPTLSELTFEALLGAVDKPIHA
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgaaaaattatgatgttttagtgattggtggaggtcctggtggatacgttgctgccatt
aaagctgctcaaatgggtgctaaagttgctttagtagaaaaacataaattaggtggtatt
tgtcttaattatggctgtattcctaccaaagcttatttaaaaagtgccaaaatgtataaa
gatatcaaacgttgtgctgattttggaattaaagtacaaaacggagtttcttttgattgg
tcctccattttatcacgcaaaaataaaattgttgctcaacttactacaggcatatctttt
ctcctgaaaaaaaataaaattgatttttaccatggttttgcaagtgttctttctccttgc
gaagtccaagtagacactaacttattgcacacccaaaaattaattattgcaacaggaagt
accgcttttgttactcctattccaggcgcccaagaagcttatcaaaaaggcattcttaaa
actagtaaagaattactacaactagaaagctatccttccaaagttactattgtaggaggc
ggtgttattggagtagaatttgcaactatttttaattcttttggtagcgaagtgactatt
ttagaaagacaagacaatattctaaatggtatggatagggacgttgttgttgcatacact
aaaaaacttcaagcagacggcatccaaattttgactcaagtagaagtaactaaaattaat
gacaatcaaactacctacactcaaaaaggcaatgccaaaacaattacttcggatgttatt
ttaatggctgtaggcaccaaagccaatcttgcaggcttagaaaaattaaatttagccctc
aaccgcaatagcgtccaaactgataatttttgtcaaacttcaattcctggagtatatgct
attggtgatgtaaacggcaaacacatgttagctcacgtggcaagtcatgaaggtattgta
gctgtgactcacgctttagaacaaaaagcacaacccattaattatgaccgtgttcctgct
tgtatttatggttttcctgaaattgcttctattggcatgaccgaacaacaagccaaagaa
aaacaaatggattataaagtttctaaaatatctctcggagctgttggaaaatctttagct
gatggcgaaaaagaaggttttgctaaattaattgtttgcaaaaaacatttagaaatttta
ggaatgcatatttatgcttacaatgctactgaattaattagcgaaatggctgtaggaatg
gaacttgaaggaactgcttacgaactatctcaagcaattcatcctcatcctaccttatca
gaacttacttttgaagctcttttaggagccgttgacaaaccaattcatgcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (21)   
   KEGG PATHWAY (14)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (90)   

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