KEGG   Komagataella phaffii: PAS_chr1-4_0283
Entry
PAS_chr1-4_0283   CDS       T01092                                 
Name
(RefSeq) Poly(A) binding protein, part of the 3'-end RNA-processing complex
  KO
K13126  polyadenylate-binding protein
Organism
ppa  Komagataella phaffii
Pathway
ppa03015  mRNA surveillance pathway
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PAS_chr1-4_0283
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr1-4_0283
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr1-4_0283
   03041 Spliceosome [BR:ppa03041]
    PAS_chr1-4_0283
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PAS_chr1-4_0283
   mRNA cycle factors
    Stress granule specific factors
     PAS_chr1-4_0283
Spliceosome [BR:ppa03041]
 Complex C
  Other components
   Complex C specific factors
    PAS_chr1-4_0283
SSDB
Motif
Pfam: RRM_1 Nup35_RRM
Other DBs
NCBI-GeneID: 8196954
NCBI-ProteinID: XP_002490400
UniProt: C4QXZ6
Position
1:1920255..1921277
AA seq 340 aa
MNICDVIFYSDQIDIQELQLKYQNVVIKEDQGFFKISAPGFIDDVYYSLIQDFGIDESTI
DIIYHSISHPGNIYFKVSEVTEANPDPASQLEGDSPPEIKKDLPPTEIPKEVYHILFTQF
EKYGIIIQSKIVTDYGFVKYKTKTSADQILMHLKGFSTKVNDRVYKVYVNHHISKKARLY
TRSNFPPPELPIPGPEFQDCNLYVKNLPPSTTDERLKQIFSQFGKIKSFKVITHEDTGAC
KGYGFVCFVNPLDASKAMVQLNNAFISPENFTIAVSFAKRNENKYNSKDGKVHHYNQNHY
FSTASGSSMPPLTAQTTQTTLAPGGLIDPSLVGMYYYPYY
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgaatatatgtgatgttattttctacagtgatcaaatcgatatacaggaattgcaattg
aagtatcaaaacgtggttatcaaggaagatcaggggtttttcaagatttcagcccccgga
ttcatagatgacgtctactactccttgatacaagattttggcattgatgaaagtactata
gacattatctaccacagtatatcgcatccggggaacatttacttcaaagtgtcggaagtg
acagaggcaaatccagatccagccagtcagttggaaggagactctcctccggaaattaag
aaggatttaccccctactgagataccaaaggaagtttatcacatattgttcactcaattt
gaaaaatacggcatcataatccaatccaagatagtcactgattacggatttgtaaagtac
aagactaaaacctctgcagaccagattctaatgcacctgaaagggttttctacgaaagtc
aatgatagagtgtataaagtctacgtgaaccatcatatttcgaaaaaggctagactgtat
acccggagtaacttccctccgccagagttaccaattccaggtccagagtttcaggattgc
aatctgtatgtgaaaaatctccctccgtctaccactgatgagaggctaaaacagatcttt
agtcaattcggaaagataaaaagtttcaaagtcatcactcatgaggatactggggcatgt
aaaggatacggatttgtttgttttgttaatccattggacgcttctaaggcaatggtacaa
ctgaacaatgcctttatcagcccagaaaactttaccatagcagtgagctttgccaaaaga
aacgaaaataagtacaactccaaggacggtaaggtccatcattacaatcagaatcattat
tttagcaccgcatcaggttcctcaatgccacctctcacagcacaaacaacacaaacaaca
ttggcacctggtgggttgattgacccgtctttggttggaatgtactattatccatactac
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (49)   

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