KEGG   Komagataella phaffii: PAS_chr4_0344
Entry
PAS_chr4_0344     CDS       T01092                                 
Name
(RefSeq) RNA polymerase II third largest subunit B44, part of central core
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
ppa  Komagataella phaffii
Pathway
ppa03020  RNA polymerase
ppa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PAS_chr4_0344
  09124 Replication and repair
   03420 Nucleotide excision repair
    PAS_chr4_0344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppa03021]
    PAS_chr4_0344
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr4_0344
Transcription machinery [BR:ppa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     PAS_chr4_0344
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PAS_chr4_0344
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 8200785
NCBI-ProteinID: XP_002493766
UniProt: C4R7L2
Structure
Position
4:702204..703118
AA seq 304 aa
MSKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADE
FISHRLGLIPLVSEDVEEMKYSRDCTCEDYCDECSVVLELSARHEGEEGTTDVYSSSLIK
VSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSPCSAIAFEY
DPHNKLKHTDFWFEVDAKKEWPDSKYATWEEPPKPGEVFDYKAKPNRFYMTVETTGSLKA
NQVFSRGIKTLQEKLANVLFELENSRPANTTAYGGATAYGGQTVYGRETSYGGNTNYGDY
NAPY
NT seq 915 nt   +upstreamnt  +downstreamnt
atgagcaaggaacccaaggttaatatcatcaacgcccaagatgatgaagttgagttgatg
cttagcgatgttaatctatcgttggccaactctcttcgtagaacgatgttggccgaagtt
cccacattagctattgacctcgtggaaattaagatgaatacctcggtgttggcagatgag
ttcatatctcacagactaggattgattcctttggtgagcgaagatgtggaagaaatgaaa
tatagcagagattgcacatgtgaagattactgtgacgagtgctctgtggtgttggaacta
agtgccaggcatgaaggagaggaaggtaccaccgatgtctattcttcttctctgatcaaa
gtgtccggtccaggaaacttgaacgttggtgaaccagtccgtagggatgattatgatcag
ggaatcttgctgtgcaagctgcggaaccaccaggagttgaacattagatgtatagccaaa
aagggtattgccaaagaacatgctaaatggtcaccatgctctgctatagcattcgaatac
gatccacacaacaaactgaaacatacagacttttggtttgaggtggatgccaaaaaagaa
tggccagattccaagtatgccacctgggaggaaccacccaaacctggtgaagtttttgat
tacaaagccaagccaaatagattctacatgacagtggaaaccacaggttctttgaaagct
aaccaggtgttcagcagggggatcaagacgttgcaggagaagttggctaacgtcctgttt
gagctggaaaactctaggcctgccaatacaacagcctatggaggagcgaccgcttatggg
ggacagacggtatatggaagagaaaccagttacggtggcaacaccaattatggagattac
aatgcaccatactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (32)   
   PDB (32)   
Protein domain (2)   
   Pfam (2)   
All databases (53)   

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