KEGG   Pseudomonas putida GB-1: PputGB1_0138
Entry
PputGB1_0138      CDS       T00650                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ppg  Pseudomonas putida GB-1
Pathway
ppg03030  DNA replication
ppg03410  Base excision repair
ppg03420  Nucleotide excision repair
ppg03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PputGB1_0138
   03410 Base excision repair
    PputGB1_0138
   03420 Nucleotide excision repair
    PputGB1_0138
   03440 Homologous recombination
    PputGB1_0138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppg03032]
    PputGB1_0138
   03400 DNA repair and recombination proteins [BR:ppg03400]
    PputGB1_0138
Enzymes [BR:ppg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PputGB1_0138
DNA replication proteins [BR:ppg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PputGB1_0138
DNA repair and recombination proteins [BR:ppg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     PputGB1_0138
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PputGB1_0138
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc
Other DBs
NCBI-ProteinID: ABY96054
UniProt: B0KG03
Position
139911..142658
AA seq 915 aa
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SAAAKGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDVEVDALVCGEPDREALQALYTEMEFKSWVAEVQREAARAGNEV
APVEEPAAKVEPTYETILDQARFEAWLDKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVA
PHEAAYVPLAHDYEGAPAQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDKA
GPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHV
QSGELGVKMGELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVL
DELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDV
HRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAA
DIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQAAQLDVP
LLVEAGIGANWDEAH
NT seq 2748 nt   +upstreamnt  +downstreamnt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctgtaccgcgcctttcac
gcgctgccgccgctgaccacgtccaagggcatgccgaccggtgcggtgaagggtgtgctg
aacatgctcaagagcctgcgcaagcaataccccgacagcctgttcgccgtggtgttcgac
gccaagggcggcactttccgcgatgccatgttcgccgaatacaaggccaaccgccccagc
atgccggacgacctgcgggtgcaggtcgagccgctgcatgccagcgtgaaggcgctgggc
tatccgttactgtgcgtcgagggtgtagaggccgacgacgtcatcggcaccctggcgcgc
agtgctgccgcgaagggtcgcccggtgatcatttcgaccggtgacaaggacatggctcag
ctggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggct
ggcgtgcacgagaaatttggcgtcggcccggaacatatcatcgacttcctggccctgatg
ggtgacaaggtcgacaacattcccggcgtaccgggcgtgggcgaaaaaaccgccgtgggc
ctgctgaccggtatcggcggcggcctcagcgatttgtacgcgaacctggacaaggtaccg
gcactggccattcgtggcgccaagaccttgccggccaagcttgaagagcaccgggacgca
gcgttcctgtcctacgagctggccaccatcaaggtcgatgtgccgctggatgtcgaagtg
gatgcgctggtgtgcggtgagcctgatcgcgaagcgttgcaggcgctgtacaccgagatg
gagttcaagagctgggttgccgaagtgcagcgtgaggccgcaagggcgggtaatgaggtt
gcgccggtcgaagagccggcggccaaggttgagccgacgtacgaaaccattcttgaccag
gcccgtttcgaggcctggctggacaagctgcgtcaggcgccgctgttcgccttcgatacc
gaaacaaccggcctggatgcccagaaggcgcagctggttggcctgtctttcgctgttgcg
ccccatgaggcggcttatgtgccgctggcccacgattacgaaggcgcgccagcccaactg
gaccgcgacgccgtgctgctggcgctgaaaccactgctggaagacccggccaaggccaag
gtcgggcagaacgcgaagtatgacatcaacatcctcgccaatggctcgcccgccatcgag
atgcgtggcgtggcctacgacaccatgctcgagtcgtatgtgctgaactccaccgccacc
cgtcatgacatggacagcctggcgcagaagtacctcgaccacaccaccatcgccttcgag
gatatcgccggcaagggcgccaagcagctcactttcaaccagatcaacctggacaaggcc
ggcccctacgcggccgaagacgccgacatcaccctgcgcctgcaccaggcgctgcaggca
cgcctggcacagacgccaagcgtgcagccggtgctgatggacatcgagatgccgctggtg
ccagtgctggccaagatcgagcgccagggcgcgctggtcgatgccgcgctgttgcacgtc
caaagcggcgaactgggcgtgaagatgggcgaactggagcaacgtgcctacgagctggcc
ggcgaggaattcaacctcggctcgcccaagcagttgggcgcgatcctttacgacaagctt
ggcatgccggtgctgagcaagaccgccaagggccagccctccaccgccgaagcggtgctc
gatgagctggccttgctcggttacccactgcctgaggtactgatgcagtaccgcagcctg
agcaagctcaaaagcacctacacagacaagctgccgggccagatcaacccccgcaccggg
cgtatccacacctcctaccagcaggctgtggcggccactggccggctgtcgtcgagcgac
cctaacctgcagaacatcccgatccgtaccgccgaaggccggcgcatccgccaggcgttc
atcgccagcccaggatacaaactgctggcggcggactactcgcagatcgagttgcgcatc
atggcccacctggccaaggacgaaggcttgctgcacgctttccgcaacgacctcgacgtg
caccgcgccacggcggcggaagtgttcggtgtggccttgcaagacgtcaccaccgaccaa
cgtcgcaaggccaaggccatcaacttcggcctgatctacggcatgagcgcctttggtttg
gccaagcagatcggcgtcgaccgcaagcagtcgcaggattacatcgaccgctacttcgcc
cgctacccaggcgtgctggcctacatggaacgcacccgcgctcaggcggccgagcaaggt
tttgtcgaaaccctgttcggccgtcgtctgtacctgccggacatcaacgccaagaacccc
gccctgcgcaaaggcgccgagcgtacggcgatcaacgcgccgatgcagggcaccgcggcc
gacatcatcaagcgggccatggtcaatgtggataactggctgagcgagagcgggctggat
gcccgagtgatcctgcaggtacacgacgaactggtactcgaggtacgcgaggacctggtt
cagcaggtgaaagatgaaattcgccagcacatgagccaggcagcgcagctggatgtaccg
ctgctggtggaggcaggaattggtgcgaattgggacgaagctcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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