KEGG   Pseudomonas putida ND6: YSA_03282
Entry
YSA_03282         CDS       T02170                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
ppi  Pseudomonas putida ND6
Pathway
ppi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    YSA_03282
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppi03400]
    YSA_03282
Enzymes [BR:ppi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     YSA_03282
DNA repair and recombination proteins [BR:ppi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     YSA_03282
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_11 AAA_30 AAA_25 MinC_N PHBC_N
Other DBs
NCBI-ProteinID: AFK68555
UniProt: I3UST4
Position
complement(1775687..1779361)
AA seq 1224 aa
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQETWPRCAGRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVVRDYWRRFCYGMQGDA
LAWVRGNWGSPDALLPRIRPLFGRVRAQQDGPEPAALIQASLQQRGAQLARIKAPWAQWA
EELRQICRDALAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPAGMA
EAWKGEPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDM
LVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFM
IGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAG
RGAFLFREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEPVSSSVYRQQLAA
SCASHIVALLNGGQQGTAGFQNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSV
YLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDERVWE
SWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAG
ELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICT
SKPVDGSRLPLAWHDSEGNAHLTLTPDEEQIERADDERLAEDLRLLYVALTRAQHACWLG
VADLKRGNQKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQTLAAKCPHITCPGLPQADEQ
IYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGADSSQAQQLLDDEVPDAQV
LREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSGNPQLIERTVGQRCNRRDWA
GWIPTLSHWMQRLLGEALPLPGSDQSVTLGQLRHYQIEMEFWFASHRVDAEQLDRLVARH
THPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGADIQAYDAMAMEKAIL
EHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFLRGASSSGHGVYHAKPPRELI
ESLDALFRGEHAPVQQDLFAGVAP
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgacccaggaccgtcctctggcactgagtttccccctgcacggtagccagctgatcgag
gccagcgccggcacgggcaagaccttcaccatttcggcgctgtacctgcgcctgatcctc
ggtcacggtggcgaacagggcttcgagcgcgagctgctgccaccgcagatcctcgtggtg
accttcaccgacgccgccaccaaagagctgcgcgagcgtatccgcgcccgcctggctgaa
gccgcacggttcttccgtggcgaactggaaggcgccgatccgctgttgcaccaactgcgt
gacgattacccacaagagacttggccgcgttgcgccggccggttggaaatcgccgtgcag
tggatggacgaggctgcggtatcgaccatccatggctggtgccagcgcatgctgcgcgag
catgccttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgagttg
ttgggccaggtcgtgcgcgattactggcggcgcttctgctatgggatgcaaggtgacgca
ctggcctgggtgcgcggcaactgggggagtccagacgccttgctgccgcgcattcgccca
ctgttcggccgtgtgcgcgcccagcaggatgggccagagcccgccgcattgatccaggca
tcgctgcagcaacgtggtgcacagttggcccggatcaaggcgccatgggcacagtgggcc
gaggaactgcggcaaatctgccgcgatgcgctggccgccaaacaggtcgacggccgcaag
atgcaagcccgttacttcgagccctggttcgacaagctctgcgcttgggccagcgatgag
caactggtagagctcgacttgggcaccggctttacccggctgaccccggcgggcatggcc
gaggcctggaagggagaacctcccgagcacccagccctcaacgccatgcagcacttgcag
caacaactgcaggccctggacagcccggatgcccctctgctcgagcacgcggccagttgg
gtatcggcacgtttcgaagtggagaagcgccggcgtgcagaaatgggcttcgacgacatg
ctcgtgcgcttgcagcacgcactcgccagcgaggccggcgagcgcctggccagcctgatc
cgtgaacagttcccggttgcgctgatcgacgaattccaggacaccgacccggttcagtac
ggcattttcgagcgcatttaccagatcagtgaaaaccgcgcagaaaccggcctgttcatg
atcggcgaccccaagcaggcgatctacgctttccggggtgccgacatctacacctacctt
gccgcgcgacgcgccaccagcggccgcctgcacagcctggacaccaactaccgctccagc
aaagccatggtggcggcggtcaaccaggtgttcctgcaggccgaggcgcgtgaagcgggg
cggggtgcattcctgttccgcgaggccgatgacaacccgctgccattcatcgaggtgcgc
gccaaggggcgtggcgaacagctgctgattgacggtgaagtcagtgcagccctgcaatgc
tggcagctggaaagtgaagagccagtctccagcagcgtctaccgccagcaactggctgct
agctgcgccagccatattgtggccttgctcaatggcggccagcagggcacggcgggcttc
cagaatgccgaaggcgagttgcgcgcctgcttgccctcggacattgccattctggtgcgt
gatggccatgaggcgcagatggtccgcgccgaactggccgcacgcgaggtgcgcagcgtc
tacctgtccgacaaggactcggtgtttgccgcccaggaagcccacgacctgctggcctgg
ctgaaggcctgcgccgagcctgactcagagcgcctgcttaaggctgctctggccagcctt
acactgggcctgtcgctggctgcgctggaccggcttaaccaggacgagcgggtctgggaa
agctgggtgatgcgttttcgcctgtaccgcgacacctggcagcgccagggggtgttgccg
atgttgcgtcacctgctgcatgacttccagctaccgcgtacgctgatccgccgcagtgat
ggcgagcgggtgctgaccaacctgctgcacctggccgagctgctgcagcaggccgctggc
gagctggacggcgaacaggcgcttatccgccacctggccgagcacctggccagttccggt
caggccggtgaagagcagatcctgcgcctggagagcgacgaacagttggtcaaggtggtg
accatccacaagtccaagggcctggaatatcccttggtctacctgccattcatctgcacc
agcaaaccggtggatggtagccgtctaccgctggcctggcatgacagcgaaggtaacgcc
cacctcaccctcacacctgacgaggagcagatcgagcgcgctgacgacgagcgcctggcc
gaagacctgcgcctgctctacgtggccctgacccgtgcccagcatgcatgctggctgggt
gtcgccgacctcaagcgcggtaatcagaagagctcgcagctgcatcgctcggcgtttggc
tacctgctggggggcggcctggccctggctggctcggcgcagctgacggactggttgcag
acgttggcggcgaagtgcccgcacatcacttgcccaggcctgccgcaggcggatgagcag
atatatcgcatgccacacgccgagcgtgaactgctgccggcacgcaggccacgccatgcg
gctgccgagcactggtggatcgcttcgtacagtgcccttcgtgtcggcgatcagaccctc
ggcgccgacagctcgcaggcccagcaactgctggatgacgaggtgcccgatgcccaggtg
ttgcgcgaggtccccgccgacagcggcgatatccatcgcttcccgcgggggcctaacccc
ggcaccttcctccatggtttgctggagtgggcaggccgtgagggcttcagcgaggtcagc
ggtaaccctcagctgatcgagcgtaccgttggccagcgctgcaatcgccgtgactgggcc
ggctggatccccaccctgagccactggatgcaacgtttgctgggcgaggcgttgccgctg
ccgggcagcgaccagagcgtaacgctgggccagctgcgtcattaccagatcgaaatggaa
ttctggttcgccagccaccgggtcgacgcagaacaactcgatcgcctggtggcacgccac
acccaccccggtctggcgcgcccagctgcgcagccgactgtgctaaacggcatgttcaaa
gggttcatcgacctggcgttcgagctggacgggcgttactacgtgaccgactacaagtcc
aactggctgggtgcggacatccaggcctacgatgccatggccatggaaaaggcgattctt
gagcaccgctacgacctgcagtatgtgctgtacctgctggccctgcaccgccagttgcgc
gcgcggctggcggactacgattatgaccgccatgttggcggcgccctgttcatcttcctg
cgcggtgccagcagcagcggccacggcgtgtaccacgccaagccaccgcgtgagctgatc
gaaagcctcgatgcactgttccgtggcgagcacgcgccggtacagcaggacctgtttgcc
ggagttgcgccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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