KEGG   Pseudomonas putida ND6: YSA_05974
Entry
YSA_05974         CDS       T02170                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
ppi  Pseudomonas putida ND6
Pathway
ppi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YSA_05974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppi03021]
    YSA_05974
   03400 DNA repair and recombination proteins [BR:ppi03400]
    YSA_05974
Enzymes [BR:ppi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     YSA_05974
Transcription machinery [BR:ppi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     YSA_05974
DNA repair and recombination proteins [BR:ppi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      YSA_05974
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: AFK70000
UniProt: I3UWX9
Position
3230888..3231889
AA seq 333 aa
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQTDEDESRSIGRLQLDASFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgcagatttcggtaaatgagttcctgactccccgccacattgatgtgcaggtagtcagt
ccgacccgcgccaaaattacgctcgagcctctcgagcgtggtttcggccataccctgggc
aacgcgctgcgccgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgag
atcgatggcgtactccatgagtactccgcgatcgaaggtgttcaggaagacgtaattgaa
atcctgttgaacctgaaaggtctcgctatcaaactgcatggtcgtgacgaagttacgctg
accttgtcgaaaaagggttcgggggtggttaccgctgccgatattcagctggatcacgat
gtcgagatcgtcaaccccgatcacgtaatcgcgaacctggcgtcgaacggcgctctgaac
atgaagctcactgtagctcgtggtcgtggttacgagccggccgactcccgtcaaaccgac
gaagacgaaagccgtagcattggccgtctgcagttggacgcctccttcagcccggtgcgt
cgtatcgcctatgtggtcgagaacgcccgtgttgaacagcgtaccaacctggacaaactg
gtcattgatctggaaaccaacggcaccctggatcctgaagaggctatccgccgcgctgcg
accattctgcaacagcagttggccgcgttcgtcgacctcaaaggtgacagcgagcctgtc
gtagtcgagcaggaagacgagatcgatccgatcctgctgcgtccggttgacgacctggaa
ctgactgtacgttcggccaactgcctcaaggcggagaacatctactacatcggcgacctg
attcagcgtaccgaagtagagctgttgaagactcctaacctgggtaagaagtccctgact
gaaatcaaggacgttctggcctctcgtggtctgtctctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaagacgacaaggcgaccgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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