KEGG   Pseudoalteromonas piscicida: B1L02_00505
Entry
B1L02_00505       CDS       T04942                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ppis  Pseudoalteromonas piscicida
Pathway
ppis03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B1L02_00505 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppis03021]
    B1L02_00505 (rho)
   03019 Messenger RNA biogenesis [BR:ppis03019]
    B1L02_00505 (rho)
Transcription machinery [BR:ppis03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     B1L02_00505 (rho)
Messenger RNA biogenesis [BR:ppis03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     B1L02_00505 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA AAA_25 Spore_III_AA
Other DBs
NCBI-ProteinID: ASD65679
UniProt: A0A3B6XXJ6
Position
1:complement(104201..105460)
AA seq 419 aa
MHLRELKDKSINELVKLAESMGLENVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQD
GFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDTISGLIRPPKDGERYFALLKVNEVN
FDKPENSRTKILFENLTPIHANERMVMERGNGSTEDITARVLDLASPIGKGQRALIVAPP
KAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPANRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHEMSEIDAMEFLIDKLSMSKTNDEFFDSMRRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgcatttacgcgaattaaaagacaagtcaatcaatgaacttgtaaaacttgctgagtcc
atgggacttgaaaacgtagctcgtttaagaaaacaagatattatctttgctattttgaaa
gcgcacgcgaaaagcggcgaaaatatatacggcggcggtgttttagaaattttacaagat
ggcttcggctttttacgttcttcagaagcatcttacctagctggccctgatgatatttac
gtttctccgagccaaattagacgtttcagcctgcgtaccggtgacaccatcagtggttta
ataagaccaccaaaagatggcgaaagatattttgcattattgaaagttaatgaagttaac
ttcgataagccagaaaactctcgtaccaaaatcctatttgaaaacttaacgcctattcat
gcgaatgagcgtatggtaatggaacgaggtaatggtagtacagaagatattactgctcga
gtattagaccttgcttctccaatcggtaaaggtcagcgcgcacttatcgttgcaccacca
aaagcgggtaaaacaatgttgctacaaaacattgctcagtccatcacatataacaaccca
gatgcgacattgatggtactactgatcgatgagcgtccggaagaagtaacagagatgcag
cgtctcgttcaaggtgaagttatagcctctaccttcgacgaacctgccaaccgccacgtt
caagtagcagaaatggtgattgaaaaagcaaaacgcttagttgagcataagaaggatgtc
atcattctacttgactcaattacacgtcttgcccgagcatacaacacggttattccttca
tcaggtaaggtattaactggtggtgttgatgccaatgcgctgcacaaacctaagcgtttc
tttggtgctgcacgtaatgttgaggaaggcggaagcttaaccatcatcgcaacggcactt
atcgataccggctctaagatggatgaagttatctacgaagagtttaagggtacgggtaat
atggaactacacctaaaccgtaagattgcggaaaaacgtgtattcccagctatcgacttc
aaccgctctggtactcgtcgtgaagaactgctaacgaaaactgatgaactgcagaaaatg
tggatcttacgtaagattgttcatgaaatgagtgagatcgatgccatggaattccttatt
gataagctttccatgagcaaaacaaacgatgaatttttcgactcaatgcgtcgtaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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