KEGG   Pandoraea pnomenusa 3kgm: U875_23530
Entry
U875_23530        CDS       T02936                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
ppk  Pandoraea pnomenusa 3kgm
Brite
KEGG Orthology (KO) [BR:ppk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppk03032]
    U875_23530 (gyrB)
   03400 DNA repair and recombination proteins [BR:ppk03400]
    U875_23530 (gyrB)
Enzymes [BR:ppk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     U875_23530 (gyrB)
DNA replication proteins [BR:ppk03032]
 Prokaryotic type
  DNA Topoisomerases
   U875_23530 (gyrB)
DNA repair and recombination proteins [BR:ppk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      U875_23530 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: AHB07949
Position
complement(5112981..5115458)
AA seq 825 aa
MSEQQKQAESGYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA
GYCDDIHVTIHADNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY
KVSGGLHGVGVSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIEVVDGVETSPLKVL
GDTDKRGTEVHFLADETIFGNVEFHYDILAKRMRELSFLNNGVRIRLTDLRTGKEDDFAF
GGGVKGFVEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRDG
GTHLTGLRAAMTRVINKYIVESEMAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTKD
KLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICSKIVEAARARDAARKAREMTRRKGVL
DGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARF
DKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQV
PELIERGYVYIAQPPLYKVKHNKDERYIKDEGELAQYMLKLAMNNAELTPSTGAAPISGD
ALGELTRSYQLADSVIERLSRVYEASVLTAVTEGVEINLDDEEAAKQSALALEAALSDDP
LAPEITITAVMEDVENADPVAALRVERRHHGNVKLSMITQDFLQSADYAQLQKTAETFKG
LIGEGATIRRGERSQPVSNFKTAMKWLMADAESKVSKQRYKGLGEMNAEQLWETTMDPTV
RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIETNALRAGNIDV
NT seq 2478 nt   +upstreamnt  +downstreamnt
atgagcgaacagcaaaagcaggccgaaagcggctatggtgcagcctccatccagatcctc
gagggtctggaggctgtgcgcaagcgtcccggcatgtacattggcgacacgtcggacggc
acgggcctgcatcacctggtattcgaggtgctggacaactcgatcgacgaggcgcttgcc
ggttactgcgatgacatccacgtgaccattcacgcggacaactccatttccgtgacggac
aacggtcgcggcattcccacgggcatcaagttcgacgacaagcacgagccgaagcgtagc
gcggcggaaatcgtgatgaccgagctgcatgcggggggcaagttcgaccagaacagctac
aaggtgtcgggcggtctgcacggcgtgggcgtgtcgtgcgtgaatgcgctgtcgtcgtat
ctgaagctcaccgtgcgtcgcgatggcaagaagcacttcatggaatttcaccgtggggtg
ccgcagaatcgcgagatcgaggtggtcgacggcgtcgagacgtcgccgctgaaggtgttg
ggcgataccgacaagcgcggcacggaagtgcacttcctcgctgacgaaacgatcttcggc
aatgtcgagttccactacgacattctcgccaagcgtatgcgcgagctgtcgttcctgaac
aatggcgttcggattcgtctgacggatctgcgcacgggcaaggaagacgattttgccttt
ggcggtggcgtgaagggtttcgtcgagtacatcaacaagtcgaagacggtgctgcatccg
acggtgtttcacgtgatgggcgagcgcgacggtatcggcgtggaagtcgccatgcagtgg
aacgacagctacaacgagacggtgctgtgcttcacgaacaacattccgcagcgtgatggc
ggcactcacctcacggggctgcgcgcggctatgacgcgcgtaatcaacaagtacatcgtc
gagagcgagatggccaagaaggccaaggtcgagacgaccggcgacgacatgcgcgagggt
ctgacgtgcgtgctgtcggtgaaggtgccggagccgaagttctcgtcgcagacgaaggac
aagctggtgtcgtcggaagtgcgcgcgccggtggaggaatacgtggcgaaggcactggag
gacttccttcaggaaacgccgaacgacgccaagatcatttgttcgaagatcgtcgaagcc
gcgcgtgcgcgtgatgcggcgcgcaaggcgcgtgagatgacgcgtcgcaagggcgtgctt
gacggcgtgggtctgccgggcaaattggcggattgccaggagaaggatccggcgctgtgc
gagatctacgtggttgagggcgactcggcgggcggttcggcgaagcaggggcgcgatcgc
aagttccaggcgattctgccgttgcgcggcaaggtgctcaacgtcgagaaggcgcgtttc
gacaagctgatttcgagcgagcagatcgtcacgctcatcacggcgcttggttgcggtatc
ggcaaggacgactacaacatcgacaagctgcgttatcaccggatcatcatcatgaccgat
gccgacgtggacggtgcgcacattcgcacgctgctgctgacgttcttctatcgtcaggtg
ccggagttgatcgagcgtggttacgtgtacattgcgcagccgccgctgtacaaggtcaag
cacaacaaggacgagcgttacatcaaggatgaaggcgagttggcgcagtacatgctgaag
ctggcgatgaacaatgctgagctgacgccgtcgacgggtgctgcgccgatttcgggcgat
gcgctgggcgagctgacgcgcagctatcagttggctgacagcgtcatcgagcgtttgagc
cgggtttatgaggcgtcggtgctgacggcggtgaccgaaggcgtggagatcaatctcgac
gatgaggaagcggcgaagcaatcggcactggcgttggaggcagcgttgagcgacgatccg
ctggcgccggagatcacgatcacggcggtgatggaagacgtcgagaacgcggatccggtg
gcggcgctgcgtgtggagcgtcggcatcatggcaacgtgaagttgagcatgatcacgcag
gacttcctgcaatcggcggattacgcgcagctgcagaagacggctgagacgttcaagggg
ctgattggcgagggtgcgacgatcaggcgtggcgagcgttcgcagccggtgtcgaacttc
aagacggcgatgaagtggctgatggccgatgccgagagcaaggtatcgaagcagcgctac
aagggtctgggcgagatgaacgcggagcagctgtgggaaaccacgatggacccgacggtc
cgccgcctgctgcgcgtgcagatcgaagacgcgatcgccgccgacggcatcttcaccacg
ctcatgggcgacgacgtcgaaccgcgccgcgctttcatcgagacgaacgcgctgcgggct
gggaatattgatgtttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system