KEGG   Pandoraea pnomenusa DSM 16536: LV28_08600
Entry
LV28_08600        CDS       T03411                                 
Name
(GenBank) hypothetical protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ppnm  Pandoraea pnomenusa DSM 16536
Pathway
ppnm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppnm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LV28_08600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppnm03400]
    LV28_08600
Enzymes [BR:ppnm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LV28_08600
DNA repair and recombination proteins [BR:ppnm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LV28_08600
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 Helicase_RecD SH3_13 UvrD-helicase AAA_22 SLFN-g3_helicase Herpes_Helicase DEAD nSTAND3 AAA_25 PhoH RecD_N CbiA UvrD_C T2SSE AAA_28 AAA_16 MukB Flavi_DEAD KTI12 DUF4350
Other DBs
NCBI-ProteinID: ALR35811
UniProt: A0A378YKP3
Position
1258039..1260237
AA seq 732 aa
MNELRRTADTPSGAQADSGVVRLAQGFARRMALLAKGNGADEVTCRYVWRASLAVSLATA
EGHVCVPLGDLLDTQASGELFPGDAPSLAVWREALFASGLCARASLAHALTNHAPTGAST
GASTIDAPAEAFPLLLDERDRLYLARYYGYEARLATALGRKLSTGQRMAVTSEDRARLRR
YFGEGVLTGADGQPEPNWQMAAAALALQRSLVVLSGGPGTGKTTTVVGLLACLLERDADL
RVALAAPTGKAAQRMQEALTARQDLPETVRQALPEAALTLHRLLGVLPESADQVGRRFRH
HAGNPLPYDLIVVDEASMIDLSMATQLLEAVPEGARLILLGDKDQLAAVEAGAVFGELSA
QRAFSPQMRSRLLDALGWPRDRPPLTGPLAGPGAHGQGGVDATADDAEAANTQHTQRARG
LEDAVVWLERTYRFGAHSAIGRLATAIKAGKVIEARKECVAPDTVQMAEVVDMTEMAGAD
RVTLTEDGGIQLSPTNLHALADGYSAYLDALTQAFETIDRLGDPAAASASDVAMVAQPVF
AAFGQFRVLCATRGARRGVEFLGAQLTAVLARRAGVALGAGGGAWFAGRPVLVTQNEYAL
NLFNGDIGIALPLGPSGTLRVAFATPDGGYRLYSPASLPAHETAFAMTIHKSQGSEFDRV
AIVLPEQASRVLSRELIYTGVTRARRQAALYAPWPVIASAIARPTQRDGGLTDRLREVLA
TMPASPPQSRLP
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgaacgagctgcgtcgcaccgccgacacgccgtcgggggcgcaagccgacagcggtgtc
gtgcgtctcgcgcaaggtttcgcacgccgcatggccctgctcgccaagggcaacggcgcc
gacgaggtgacgtgccgctatgtctggcgtgcctcgcttgccgtaagcctcgcgactgcg
gaaggtcatgtgtgcgtgcccctcggcgacctgctcgacacccaggccagcggcgagttg
tttcctggcgacgccccttcgctggccgtctggcgagaggcccttttcgccagtggtctg
tgcgcgcgggcaagccttgcgcatgcattgacgaaccatgcgcccacaggcgcgtcgact
ggcgcgtcgacgatcgatgcgccggccgaggcgtttccgctgttgctcgacgagcgcgat
cgtctctatctggcgcgctattacggctacgaggcgcgtctggcgacggcgctcgggcgc
aagctctcgacggggcagcgcatggccgtcacctccgaggaccgcgctcgcttgcgacga
tacttcggcgagggggtgctgacgggggcggacggacaaccggaaccgaactggcagatg
gcggctgccgcgctggcgctccaacgctcgttggtggtgctcagcggcggccccggcacc
ggcaagaccacgacagtggtcggtttgctagcctgcctgctggagcgcgacgccgatctg
cgcgtcgcgctggcggcgcccacgggcaaggccgcgcaacgcatgcaggaggcgctcacc
gcgcgccaggatctgcccgagaccgtgcggcaggcgctgcccgaggcggcactcaccctg
caccgtctgctcggcgtgcttcccgagtccgcggatcaggtcggacgtcgcttccggcat
catgcgggcaatccgctgccctacgatctgatcgtggtggacgaggcatcgatgatcgac
ttgtcgatggcgacgcaactgctggaagccgtgccggagggcgcccgtctgattctcctg
ggcgacaaggaccagttggcggccgtggaggccggggcggtcttcggcgaactgagcgcg
cagcgtgcgttttcgccacagatgcgttcgcgtctgctcgacgcgctggggtggccgagg
gatcgtccaccgctcacggggccgttggccgggcctggtgcgcacggtcaaggcggtgtc
gacgcaactgccgatgatgccgaagcggcgaacacgcagcacacgcagcgcgcccgcggg
cttgaagatgcggtggtctggctcgaacgcacctatcggttcggtgcccactcggccatt
ggccgactggctaccgccatcaaggcgggcaaggtcatcgaggcgcgcaaggagtgtgtc
gcgccggacaccgtccagatggcggaagtggtggatatgacggaaatggcgggagcggac
agggtgacgctgaccgaggacggcggcatccagttgtcgccgacgaatcttcatgcgctc
gccgacgggtattcggcttacctcgacgcgctgacgcaggccttcgagacgatcgatcgg
ctcggcgaccctgcggcggcgagtgcgtctgacgtcgccatggtcgcgcagccggttttc
gccgccttcggacaattccgcgtgctgtgcgccacgcgcggtgctcgccgcggcgtcgag
ttcctcggcgcacaactgacggccgtgctggcgcgacgcgcgggcgtcgccctcggcgct
ggcggcggggcatggtttgcagggcgtccggtactggtcacgcagaacgagtacgcgttg
aacctgttcaacggcgacatcggcatagccctgccgctcggtccgtccggtacgctgcgt
gtggcgttcgccacgccggacggcggctaccgactgtactcgccggcaagcctgcccgca
cacgagaccgcgttcgcgatgacgattcacaagtcgcaaggctcggagttcgatcgcgtc
gcgatcgtcctgcccgagcaggcgagccgtgtgctctcgcgggaattgatctacacgggc
gtgacgcgtgcccgccggcaagccgcgctttatgcgccgtggccggtcatcgcatctgcc
atcgcgcggccgacgcagcgcgacggcggcttgaccgaccgcttgcgcgaggtgttggct
acgatgccggcttcgccgccgcaatcgcggcttccgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (35)   

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