KEGG   Paenibacillus polymyxa M1: PPM_3840
Entry
PPM_3840          CDS       T01968                                 
Symbol
yvcC3
Name
(GenBank) Lipid A export ATP-binding/permease protein msbA
  KO
K18104  ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2]
Organism
ppo  Paenibacillus polymyxa M1
Pathway
ppo01501  beta-Lactam resistance
ppo02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:ppo00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    PPM_3840 (yvcC3)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    PPM_3840 (yvcC3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ppo02000]
    PPM_3840 (yvcC3)
   01504 Antimicrobial resistance genes [BR:ppo01504]
    PPM_3840 (yvcC3)
Enzymes [BR:ppo01000]
 7. Translocases
  7.6  Catalysing the translocation of other compounds
   7.6.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.6.2.2  ABC-type xenobiotic transporter
     PPM_3840 (yvcC3)
Transporters [BR:ppo02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB-BAC subgroup
    PPM_3840 (yvcC3)
Antimicrobial resistance genes [BR:ppo01504]
 Gene sets
  Multipdrug resistance modules
   Multidrug resistance, efflux pump AbcA [MD:M00700]
    PPM_3840 (yvcC3)
SSDB
Motif
Pfam: ABC_membrane ABC_tran SMC_N AAA_21 RsgA_GTPase AAA_29 ABC_membrane_2 AAA ABC_ATPase AAA_22 AAA_5 SbcC_Walker_B AAA_23 DUF5906
Other DBs
NCBI-ProteinID: CCI70649
Position
complement(4438128..4439945)
AA seq 605 aa
MEKEHHGRQDEQEDRTKEKPGKRPDKAGMGRFIKLIASAHPPKAILIIALILTLIQTIAG
LIVPMMTKGLIDGLTFSSLNRMVIIGLLGAFVLQAVASAVSIYMLNYAGHKIVANLRKRL
WHKILSLPIPYFDRNRSGDTMSRVTNDTSLIMNLITEYLVNLISNVIAIIGGIALLFYLD
WVMTLIIMTIVPLTALILFPVGRKMYRISKKQQDEMADLTSVLSQVIGEIRLVKAYGTES
REAQAGEDRIYRMFRFGLQESRILALVGPISTFLLTAVLVIILGVGGVRVASGVLTAGDL
VAFILLLFQVITPMAQFTTLYSRLQKVVGATERIQTILDHEEEPLELKQEAAKESRDIVF
RDVAFSYTEGEEVLHHANLVIPANRTTAFVGPSGSGKSTLFSLLERFYVPDTGEIRYGDE
SISSYTLSSWRSKIGYVSQESSMMTGTVKDNITYGLGREADLEEVRRAAMMAYADTFIMD
LPQGYDTEVGERGMKLSGGQRQRIAIARALLRSPDILMLDEATSSLDSSSEHEVQKALAN
LMEGRTTIVIAHRLSTVVHSDQIIVLDKGNVTGAGTHTELLETHQVYRELAQKQFVEMGE
KLHTL
NT seq 1818 nt   +upstreamnt  +downstreamnt
atggaaaaagaacatcatgggcgacaagatgagcaggaggatcggacgaaggaaaagccg
gggaaaaggccggataaggctggtatgggtcggtttatcaaactgattgcgagtgcacat
ccgcccaaggccattctgatcattgccctgattctgaccctgattcagacgattgctggt
ttaatcgtaccgatgatgaccaaagggttaattgatggcttaaccttttcttcactgaac
cgtatggtcattattggtctgcttggcgcttttgtgcttcaagcggtagcttcggcggtt
tcgatttatatgttgaactatgccgggcataagattgtggctaatttgcgcaaacgttta
tggcataaaatcttatctctacctatcccttactttgatcgaaatcggtcaggagatacg
atgagtcgagttaccaatgatacaagcctgattatgaacttaattaccgagtatctagtt
aatctgatctctaatgtaattgcaattattggtggtattgcgttgttattttatctggat
tgggtgatgacgctcattattatgaccattgttccgctaacagccctgattttatttccg
gtaggcagaaaaatgtatcgtatctccaaaaaacagcaggatgagatggcagatctgacc
tcagtactgagtcaggttatcggcgaaatcaggctggttaaggcctacggaacggaaagc
agagaggcacaggccggggaggatcgcatttaccgtatgttccgcttcgggttgcaggag
tcacgtatattggcccttgtgggtcctatttctacctttttgctaactgcggtgctggtt
attatattgggtgttggcggtgttcgcgtcgcatcgggtgtactgaccgcaggggatttg
gtggcttttattttgctactatttcaggtgattacgccgatggcccaattcacgaccttg
tattcacgtctgcaaaaggtggttggggccactgaacggattcagactattttagatcat
gaagaggaaccacttgaattgaaacaggaagcggcaaaagagagcagagacattgtattt
cgtgatgttgctttttcctataccgaaggtgaggaggttcttcatcatgcaaacctggtc
ataccggctaaccggacgacagcattcgtggggccgagcggaagtgggaagtccaccttg
ttttcattgttggaacgcttttatgtgccagatacaggggaaattcgttacggagacgaa
tcgatatcttcatatacactttcctcctggcgctccaaaattggttatgtatcacaggaa
agctcaatgatgaccggaacggtcaaagataatataacgtatggtttagggcgcgaagct
gatttggaagaagtgagacgagctgccatgatggcgtatgcggatacatttattatggat
ctacctcaaggctatgatacggaggtaggggagcggggaatgaagctctccggcgggcag
cgtcaacggatcgccattgcacgtgcgcttcttcgcagccctgacatcctcatgctggat
gaggctacttctagcctggacagctcatccgagcatgaggtgcagaaggccttagcgaac
ttgatggaaggacgtacgacaattgtcattgcacaccgattgtctacagtggtccactcc
gatcaaattattgtgttggacaagggcaatgtaactggtgcagggacccataccgagtta
ttagagacgcatcaggtgtaccgcgagctggctcaaaagcagtttgtggagatgggagaa
aagctccatactttgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (26)   

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