KEGG   Paenibacillus polymyxa Sb3-1: RE92_05340
Entry
RE92_05340        CDS       T03812                                 
Name
(GenBank) deoxyribonuclease IV
  KO
K01151  deoxyribonuclease IV [EC:3.1.21.2]
Organism
ppoy  Paenibacillus polymyxa Sb3-1
Pathway
ppoy03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ppoy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RE92_05340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppoy03400]
    RE92_05340
Enzymes [BR:ppoy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.2  deoxyribonuclease IV
     RE92_05340
DNA repair and recombination proteins [BR:ppoy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     RE92_05340
SSDB
Motif
Pfam: AP_endonuc_2
Other DBs
NCBI-ProteinID: AJE50526
Position
complement(1208884..1210011)
AA seq 375 aa
MLKIGSHVSFSDKGLLSATKEASSYGSSSFMIYTGAPQNTRRKPMESMYLEEGKQLMAEK
GMEDIVVHAPYIINLGSYKENTYELAVSFLQEEIRRTHAIGVKNIVLHPGAFTDKDAEYG
IGRIADGLNEVLNGVKETDVNIALETMAGKGTEMGRSFEEIASIIEKVERNERLTVCMDT
CHIHDAGYDIVNDLDGVLEQFDRIVGLNRIQVVHINDSKNPVGAHKDRHTPIGSGWIGYQ
TIHNVVHHEALQGRPFILETPWIGKEAKTQRPMYEVEIALLRGNVKERFGDEFLGQVEQL
HSFFKKQDVDVRKFVLDTWTLLKNDAKARKADPREPLERLYDMITEAELFPEMSEEHINQ
RLIAWFAGSHLPVTV
NT seq 1128 nt   +upstreamnt  +downstreamnt
atgctgaaaattggttctcatgtgtctttctcggacaagggtctgctcagcgctacaaaa
gaagcgtcttcttacgggtccagctcgtttatgatatacacgggggcaccgcaaaacacg
cgccgtaagccgatggagtccatgtatttagaggaaggcaagcagctaatggcggaaaag
ggaatggaagatatcgtggtgcatgctccgtatatcatcaatctcggctcctacaaagaa
aatacctatgagcttgcggtcagctttcttcaggaggaaattcggcgcacacatgcgatt
ggtgtgaaaaatatcgtgctgcatccgggggcttttacagataaagatgcagagtacgga
attgggcgtattgccgatggtttgaacgaggtactgaacggtgtgaaggagacagatgtc
aacattgcacttgaaacgatggcaggcaaaggcacagaaatgggtcgtagctttgaggaa
attgcctccattatagaaaaagtagagcgcaacgagcgtctgacggtttgtatggacacc
tgtcacattcatgatgcgggttatgacattgtcaatgatttggacggtgtactggagcag
ttcgaccgtattgtcggcttgaatcgcatccaagttgttcacataaatgacagcaaaaac
ccggttggcgctcataaagaccgccatactccgattggatcaggttggattggttatcag
actattcataatgtggtacatcatgaagcacttcaaggacgtccgtttattttggagacg
ccgtggattggaaaagaagccaaaactcaacgaccaatgtatgaagttgagattgctttg
cttcgtggtaatgtaaaggaacgctttggagatgagtttttgggtcaggtggagcagctg
cattcgtttttcaaaaaacaggatgtggatgtccgtaaatttgtactggatacttggact
ctgctgaaaaatgatgccaaagcaagaaaagcagacccgcgtgagccgctggagcgtctg
tatgacatgataacggaagcagaactcttcccagagatgagcgaagaacacattaatcaa
cggttgattgcctggtttgccggtagtcatctgccagtgacggtataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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