KEGG T03178: PPSQR21

Paenibacillus polymyxa SQR-21: PPSQR21_009240

Entry

PPSQR21_009240    CDS       T03178

Symbol

rtcB

Name

(GenBank) rtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

ppq Paenibacillus polymyxa SQR-21

Brite

KEGG Orthology (KO) [BR:ppq00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppq03016]
    PPSQR21_009240 (rtcB)
Enzymes [BR:ppq01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     PPSQR21_009240 (rtcB)
Transfer RNA biogenesis [BR:ppq03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    PPSQR21_009240 (rtcB)
Prokaryotic type
   tRNA splicing ligases
    PPSQR21_009240 (rtcB)

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

AHM64584

Position

1025392..1026618

AA seq 408 aa
MAYQEMNGVRVWGAPDPGALSQARTCAENGNVIQALLMADHHKGYSQPIGGVVVYDGQIS
PSGVGYDIGCGNKAVRTKLSAADIMPRISTVMNEIARQISFGVGRVNEVQVDHELFDDPD
WAVYAAIGKQEHNKLKTLAREQLGTVGSGNHFVDVFVEEATGQVWVANHFGSRGFGHKTA
SGFLNLAAGREFLGKAPGEHMDQPPVLLDMNSELGDMYYRAMRLAGRYAYAGRDYVIEQV
LGIMGTEADFTVHNHHNYAWKEQHDGRDTIVVRKGATPSAPGQMGFIGGSMGDISVIVRG
KDSIENRDSYYSTVHGAGRIMSRTQAAGKMNWKTRTRSGGQITDLQMKEAVRNYGVELRG
AGTDESPFVYRKLREVLDAHSETVEVMHVLKPIGVCMAGANEFDPYKD

NT seq 1227 nt +upstreamnt +downstreamnt
atggcttatcaagaaatgaatggagtacgcgtatggggagcacctgatccgggggcacta
tctcaagcccgcacatgtgccgaaaatggcaatgtgattcaggcgctgctgatggcagat
catcataaaggctacagtcagccgattggtggtgtggtggtatatgacggacaaatttca
ccttcaggtgtggggtatgatatcggctgtggaaataaggcggtaagaaccaagctgtct
gcagcagatattatgccgcgtatttcaaccgtgatgaatgagattgcacgtcagatttcg
tttggcgtaggtcgtgtgaatgaggttcaggtagaccatgagctgttcgatgacccggat
tgggcggtatatgcagcgattggaaaacaagagcataataaactgaagaccttggcgaga
gaacaactgggtacagtaggaagtggtaatcattttgttgatgtatttgtggaggaagcg
acaggacaggtctgggttgccaatcatttcggtagccgtggctttggacacaaaacagca
agcgggtttctaaatttggccgcaggacgggagttcctcggaaaggcgccaggagaacat
atggatcagccgcctgtgctgctggatatgaacagtgagctgggggacatgtactaccgt
gcgatgcgccttgccggacgttatgcttatgccggacgtgactatgtgatagaacaagtg
cttggtattatggggactgaagcggactttacggtgcataaccaccataattacgcgtgg
aaagaacagcatgatggacgcgacaccattgtggtccgcaaaggtgcaaccccctcggcc
cctggtcaaatgggctttattggaggaagcatgggcgatatctcggtgattgtacgtgga
aaagattcgatagaaaatcgggattcctactatagtacagttcatggcgcagggcgtatt
atgagtcgtacccaggcagctggtaaaatgaattggaaaacccgtacgcgtagcggtggg
cagattacggacctacagatgaaggaggccgttcgaaactacggtgtcgagctgcgcgga
gcaggtactgatgagagtccgttcgtctaccgcaaactgcgtgaggtgctggacgctcat
tccgagaccgtggaagttatgcatgtgctgaagccgatcggggtatgcatggctggggcc
aatgagtttgacccttataaggattaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

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