KEGG   Paenibacillus polymyxa SQR-21: PPSQR21_020070
Entry
PPSQR21_020070    CDS       T03178                                 
Name
(GenBank) DNA polymerase iii, alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
ppq  Paenibacillus polymyxa SQR-21
Pathway
ppq03030  DNA replication
ppq03430  Mismatch repair
ppq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PPSQR21_020070
   03430 Mismatch repair
    PPSQR21_020070
   03440 Homologous recombination
    PPSQR21_020070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppq03032]
    PPSQR21_020070
   03400 DNA repair and recombination proteins [BR:ppq03400]
    PPSQR21_020070
Enzymes [BR:ppq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PPSQR21_020070
DNA replication proteins [BR:ppq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PPSQR21_020070
DNA repair and recombination proteins [BR:ppq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PPSQR21_020070
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI DNA_pol3_a_NII HHH_6 tRNA_anti-codon RNase_H_2 HHH_3 T2SSK STI1-HOP_DP
Other DBs
NCBI-ProteinID: AHM65655
Position
2226515..2230831
AA seq 1438 aa
MGGAEEKRKRLELLMKQVVMPAGVVDPYFLDGWIDQVEISRTNKDWNITIAKETLVPAQV
YRTFCIQVQEKMSHIAKITFRFQYSEQVQPGDIIGEYWKLFLEWVHREIPSVNGWMNRAV
HEWEDGLLLLTMSDSMSLELARKKQIDQAIIKFYDKYFGLSMRIKVQVGESNQEALQEFQ
EKKMQEEREVIQQMMESMEAEMPPLEEEEGDVRLQFGYDIKEPAIPMQEIQDEEKKVTLQ
GTIFGLDSKELRNGSTLFTYYLTDFSDSLQMKMFAKTKEDLKILSLLANGKWVKVRGRVE
YDRFMQIPELVMIPSDLVEVQAPPGRKDNAAEKRVEFHLHTKMSAMDAVASIDQYVKTAA
KWGHKAIAVTDHGGVQCYPDAAKAAKKNGIKMIYGIEANVVNDAVEVVMQAQPLNLKTAT
YVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDRYATFVNPHERIPYNIQQLTNINDEMV
KDAPDVEPVMKEFVAFAGDAVLVAHNARFDVGFIQATLRKMGLPEMTNPVLDTLELARLL
FPTLKNHRLNTLTTKYKVALESHHRAIDDTVALAEVLNGLLNDAEQIKGFKMLDRLNDYV
GKDLSTVRPFHCCIYALNPVGKKNLYKLVSMSHTEYFKRVPCIPKSKLSEMRDGLLIISG
CEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSGPDALKTAIRKVCE
IGKRLDKPVIATGNVHYLETRDKLYRDITIHGITGFSPLKDIRKPDAHLRTTDEMLAEFE
FLGEEKAYEVVVTNTSELAERFEELELFPDKLFTPLLDGADEEIRNTCYETARSIYGESL
PEVVVARLEKELEPIIKYGFSANYLISERLVKKSNQDGYLVGSRGSVGSSVVATFLGISE
VNPLPAHYICGNSDCKHSEWFLDGSVPSGFDLPDKNCPNCGGKLKGEGQDIPFETFLGFK
GDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRAGTIGTVAEKTAFGFAKKYEEAHHKK
WRGAELNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEDITPVQYPADDTSSEWKTTHFDY
HAFDANLLKLDILGHDDPTMMRMLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVTPQQIR
TPVATYGVPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWLGNAQELIKNNTCNIK
TVIGCRDDIMLFLIYKAGMDAGLAFKITESVRKGKGLSAEWIEEMKKCKVPQWYIDSCLK
IQYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATYFSVRAADFDIDLCCQGYDAIARKIV
EIEQLGFQAPPKEKGMLPILEMALEMTARGFSFKSIDLYRSEATRFKVDGDSLIPPFGAL
QGIGDNAARNIAAAREQGEFLSVEDFQQKSKASKTIVEMLSQMGCFRGLPESNQLSLF
NT seq 4317 nt   +upstreamnt  +downstreamnt
atgggcggagctgaagaaaagagaaagcggctggaactgctaatgaagcaggttgtaatg
ccggcaggagtggttgatccttattttttggacggttggatcgatcaggttgagattagc
cgtaccaacaaggattggaatatcactattgccaaggagacactggtccccgctcaggtg
tatcgtacgttctgtattcaagtacaggaaaaaatgagtcatatcgctaaaatcacattc
cgctttcagtacagtgagcaggttcaacctggtgatattatcggtgaatactggaagctt
tttttagagtgggtgcaccgtgaaattccatctgttaacggttggatgaaccgggctgtg
catgagtgggaagacggtctattattactaacaatgagcgatagtatgtcattggaacta
gcgcgtaaaaagcagatagatcaagctattattaagttttacgataaatatttcgggctc
tctatgcgtattaaagttcaggtgggtgaaagtaaccaggaggcattacaggaattccag
gaaaagaaaatgcaggaagaacgcgaagttattcagcagatgatggaaagtatggaagct
gaaatgccacctttggaagaagaagaaggggacgtgcggcttcaatttggttatgacatc
aaagaaccggctattccgatgcaagagattcaggacgaagagaagaaagtcaccctacaa
ggaacaatcttcggtttggacagtaaagaattgcgcaatggcagtacgttgtttacgtat
tatttgacagactttagtgattctttgcaaatgaaaatgtttgctaaaactaaagaagat
ctaaaaattctcagtctgttggctaacggtaaatgggtcaaagtgcggggacgagttgaa
tatgaccgttttatgcaaattcctgagttggttatgattccttccgatctagttgaagta
caggccccacctggacgtaaggataatgcagcggaaaaacgggttgagtttcatctacac
acaaagatgagcgccatggatgctgtcgcctcgattgatcaatatgtcaaaacagccgcc
aaatgggggcacaaagcgattgcggtcacagatcatggcggtgtgcaatgctaccctgat
gctgctaaggctgcaaagaagaacggcattaaaatgatctacggcattgaggccaatgta
gttaatgatgctgtcgaagttgtaatgcaggcacagcctttaaatttgaaaacagcgact
tatgtcgtttttgatattgaaaccacgggtttgtcagttacacaaaataaaatcattgag
attgctgctgttaaaatgcatgagggcaaggaaattgatcgttatgcaacctttgtcaat
ccgcatgaacgtataccctacaacattcagcaactgaccaacattaacgatgaaatggtc
aaggatgcgccggatgtcgaacctgttatgaaggagttcgtagcttttgctggtgatgct
gtattggttgctcataatgcgcggtttgatgtcggctttatccaggccactcttcgaaag
atgggtttgcccgaaatgaccaatccggtgctggatacgctggaactggctcgtttgctg
tttcctacgttgaaaaatcaccgtctgaacacactgactactaaatataaagtcgcgttg
gaaagccatcaccgggctattgatgatacagttgcgttggcagaagtgttaaacggacta
ctaaacgatgcagagcaaattaagggttttaaaatgctcgaccgcttgaatgattatgtg
ggaaaggacctatcgactgttcgtcctttccactgctgcatttatgctctcaatccggtt
ggtaaaaaaaatctgtacaagctggtttctatgtctcataccgaatatttcaagcgtgtg
ccttgtattcctaaatcgaaattgtctgagatgagagacggattgcttattatttctggc
tgcgaaaaaggagaattcttcgaggccgtgttgaacaagtccgaggaagaagccgaggag
attgcacagttttatgatgtgttggagattcaacctttgacgatgtatatgcatctggtg
gaaaagcaactggtaagcgggcctgatgcactaaaaacggccatacgtaaagtatgcgaa
ataggaaaacgtcttgataagcccgtgattgctacaggcaatgttcactatttggaaact
cgcgataagctgtaccgtgatattaccattcacggcattactggatttagcccgctaaag
gatatccgaaagccagatgctcatttacgtacaacggatgaaatgctggcagagttcgag
tttttgggcgaggaaaaagcgtatgaagttgttgtgacaaatactagcgagctggcagag
cgttttgaagaactggaactgttccctgacaagctttttacgcccttactggacggagca
gatgaggaaattcgcaatacatgctatgagacggctcgatccatttatggtgaatcctta
cctgaggttgttgtagctcgccttgaaaaagaattggaacctattattaaatacggtttc
tccgctaactatctcatttctgaacgtctggttaaaaagtctaaccaggatggatacttg
gtaggttcacgggggtctgttggttcttctgtagttgctacttttctcggtatttctgag
gtaaatccgctgcccgcccattatatttgcggtaattctgactgtaaacacagcgaatgg
tttttggatggaagtgttccaagcggttttgacttgccagataaaaactgtccaaattgc
ggtggcaagctcaagggtgaggggcaggatataccttttgaaacgttcctcggttttaaa
ggagataaagttcccgatattgacttgaacttctctggtgaatatcaacctgttgcccat
aattatacgaaagtattgtttggtgaaaaaagcgttttccgtgcaggaactattggtaca
gtagctgagaaaacggcgtttggatttgccaaaaaatatgaagaggcacatcataaaaaa
tggcgcggagccgagctgaacaggctggcttctggttgtacgggtgtaaaacgtagtacc
ggacagcatccgggcgggatcgttgttgttcctgattatattgaggtcgaggacattaca
ccagtacagtatccggctgatgatacgagctcggaatggaaaacgacgcattttgattat
cacgcttttgatgcgaacttactcaagctcgatattctgggccatgatgatccgaccatg
atgagaatgcttcaggatttgaccggggttgaccctacgaccattccaatgaatgatccc
aaggtgatgagcatgttcaactccacggaggcactcggtgtaacaccgcagcaaatccgc
acgcctgttgccacctatggtgtaccagagatgggaacaaaatttgtacgccagatgctg
gtagagtcgcagccgagttcttttgccgatttactgcaaatatccggtttgtctcacggt
acgggtgtatggctggggaacgcacaagagttgattaaaaataatacatgtaacatcaag
accgtaattggttgtcgggatgatattatgctgtttttgatttacaaggcggggatggat
gcaggtctggcctttaaaattacggagagcgtacgtaaaggtaaagggcttagtgccgaa
tggattgaagaaatgaaaaaatgcaaggtgccgcagtggtacattgattcctgtctaaaa
atccagtacatgtttccgaaagcgcatgctgcagcctatgttatttcagcggtgcgtaca
gcgtatttcaagctgtatcatccgatcgagtattatgcaacttacttctcagtacgtgca
gccgattttgatattgacctgtgctgtcaagggtatgatgcgattgcacggaagattgtc
gaaattgagcagcttggttttcaggctccacctaaagaaaaagggatgcttccaattctg
gagatggctttggaaatgacggctcgcgggtttagttttaaatctattgatttgtaccgt
tccgaagctactcgtttcaaagtggacggggactcgctcattcctccgttcggagctctt
cagggtattggagataatgcagcacgtaacatcgcagcggcccgtgaacagggtgaattt
ttgtccgttgaggattttcaacagaaatcgaaggctagtaaaaccattgtcgaaatgctg
tcccaaatgggttgctttcgaggtctgccagagagtaatcagctgtctctgttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (24)   

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