KEGG   Photobacterium profundum: PBPRA2997
Entry
PBPRA2997         CDS       T00173                                 
Symbol
VC2319_O
Name
(GenBank) putative exodeoxyribonuclease V, 67 kDa subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ppr  Photobacterium profundum
Pathway
ppr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PBPRA2997 (VC2319_O)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppr03400]
    PBPRA2997 (VC2319_O)
Enzymes [BR:ppr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     PBPRA2997 (VC2319_O)
DNA repair and recombination proteins [BR:ppr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PBPRA2997 (VC2319_O)
SSDB
Motif
Pfam: AAA_19 AAA_30 RecD_N UvrD_C_2 AAA_11 SH3_13 Helicase_RecD Viral_helicase1 AAA_22 UvrD-helicase SLFN-g3_helicase nSTAND3 DEAD AAA_16 AAA_24 AAA_28 UvrD_C MukB CbiA TrwB_AAD_bind T2SSE PhoH SRP54 NTPase_1
Other DBs
NCBI-ProteinID: CAG21331
UniProt: Q6LMZ5
Position
1:complement(3433343..3435466)
AA seq 707 aa
MMESRSMLKRLQELTKQGALRQLDYQFAKFVALRSPESHSSLVALITALVSHELGKGHVC
LMLNDLNTQSLFGLSSHVSVTLLDGLPEPKHWEAELSGLSVISNMTQGEQHATPLVLQDG
RLYLHRYWHFEQLVANKLLHAAQSVAPAAVMPSVLNTLFPRTYTYLYQALQQLKKGPSST
SDAGDSVERRQKEVCDKLDVVQANELDWQAIDVALTSANKAEELSVLDDLVPQSVCLNWQ
KVAAAMAITRQFSVISGGPGTGKTTTVAKLLAALVMQADDANSGENVITPNIKLVAPTGK
AAARLTESIGLAVQSLPVDPDVRLRIPTQSSTIHRLLGSVPNQVDFRHHRDNPLHLDVLV
VDEASMVDLPMMARLLDALPPHAKLILLGDRDQLASVEAGAVLGDICAFARQGYSPQQDQ
ILSQLTGFNVSGIRLGTHDDNSVSPIADSLCMLQKSYRFHAESGIGKLAKAINDGKPYDV
DRICQHDFKDINHYPLSAENYQKMINLTVTFYRDYLDAIEHKQEPEVVLKAFSSVRLLCA
LREGDFGVVGLNQRIERELVRIGKISQTDDTWYEGRPVMITRNDHSLGLYNGDIGIAMID
EKVDSNKPHLRVFFEMPDGSIRSVLPSRLPEHETVYAMTIHKSQGSEFADTLMVLPADFT
PILTRELIYTGVTRAKSRLYLFAQPDVIARAVRLRTERASGLARLLG
NT seq 2124 nt   +upstreamnt  +downstreamnt
ttgatggagagcagatcgatgcttaagcgtttgcaagaactcacaaagcaaggtgcattg
cgtcagcttgattatcagtttgctaaattcgttgcgttgcgtagtcctgaatcgcattcc
tcattagtggctttgattaccgctcttgtcagtcatgaattaggtaaagggcacgtctgt
ttaatgctcaatgatctgaatactcaatcattatttggcttatctagccatgtgtcagtt
accttactcgatggtttaccagagcctaaacattgggaagctgagctaagtggtttatcg
gttatttcaaacatgacgcaaggtgaacagcatgccacaccgttagtactgcaagacggt
cgtttatatttacaccgttactggcattttgagcagctggtggcgaataaattgttgcat
gccgcacaatcggtagcgcctgccgctgttatgccatcggtactgaatacgctgtttcct
cgtacttatacctatttgtatcaagccttacagcagttaaaaaaagggccgtcatcaaca
tctgatgctggtgacagtgttgaacgtcgccagaaagaagtgtgtgataagttagatgtg
gttcaagctaatgagttggattggcaagcgattgatgtggcattaacttcggccaataaa
gcggaagagttatctgtattggatgatttggtgccacagtctgtgtgccttaactggcag
aaagtggctgctgcgatggcgattacgcgtcaattttcggttatatcaggtgggccgggt
accggtaaaacaaccactgtcgccaagttacttgctgcgttagtgatgcaagccgatgat
gctaatagcggtgaaaacgtcattacaccgaacattaagctagtagcgccgacagggaaa
gctgctgcccgtttgacagagtcgatcggtttagcggtacagtcgctacctgttgaccct
gatgtgcgtctgcgtatcccaacgcaatcaagtaccattcaccgcttattaggttcagtt
cctaatcaagttgattttcgtcatcatcgagataacccattacaccttgacgtgctggtg
gttgatgaagcatcgatggttgatttaccaatgatggcacgtttgcttgatgcattaccg
ccccatgctaaattgattctattaggtgaccgtgatcagctggcatctgttgaagcaggc
gctgtgctgggtgatatttgtgcttttgcccgtcagggatacagcccacagcaagatcaa
atactgagccaattaacagggtttaatgtctctggtattcgtcttggtacgcatgatgat
aatagtgttagccctattgcagacagcttatgcatgctgcaaaaaagttaccgttttcat
gccgagtcgggtatcggtaaattggcgaaagcgatcaatgatggaaaaccgtatgatgtt
gatagaatctgccaacacgatttcaaagacattaatcattacccattgagtgctgaaaac
taccagaagatgattaatctaacggtgaccttttaccgtgattatttagatgccattgaa
cataaacaagagccggaagtggtattaaaagccttttctagcgtacggttattatgtgca
ttacgggaaggtgattttggtgtggttggtttgaatcagcgtatagaacgtgaactggta
cgaattggaaaaataagccaaaccgatgatacttggtatgaaggtcgacctgtcatgatc
acccgaaatgatcatagtttagggctctataatggtgatattggcatcgccatgattgat
gaaaaagtcgactccaataaaccgcatctgcgtgtattttttgaaatgcctgatgggtct
attcgcagcgtattgccaagtcgattacctgaacatgaaaccgtgtatgcgatgacaatc
cataaatcgcaagggtctgaatttgctgacaccttgatggtattgcctgcagactttacg
cccattttaacgcgagagctgatttatactggcgttacacgagcgaaaagccgcctgtat
ttgtttgcccaaccagatgtgatagctcgggctgtaagattgcgaacggaaagagcaagt
ggattagcccgtttattaggatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (48)   

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